Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A03
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    31   0.42 
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    29   1.7  
12_02_0170 - 14871985-14872110,14872239-14872454,14872541-148725...    28   4.0  
05_07_0107 - 27730730-27730831,27730922-27730997,27731213-277313...    28   5.2  
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     27   9.1  

>06_03_1306 +
           29208882-29209547,29209641-29209854,29209947-29210023,
           29210132-29210171,29210254-29210323,29210419-29210488,
           29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 309 CTSQRFRKHTRFLDSGC-IVRDYWASSCVGHIIIPFIHCWKNCTFYRVRDRTSDV 470
           C ++  +KH     +GC ++ D W S C    I   +HC K   F +  D  SD+
Sbjct: 736 CHARDLKKHWEM--NGCSVILDTWESRCGKSFISVLVHCSKGMLFIKSMD-VSDI 787


>03_02_0859 - 11853928-11854138,11854225-11854683,11854760-11854991,
            11855064-11855187,11855276-11855960,11856429-11856735,
            11856832-11858188
          Length = 1124

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 316  LNDLENIPAFWILGALYVTTGPAVAWATLLFRLYTVGRIVHSIVYAI 456
            ++ +  +P FW   A+Y   G  + WA LL  +  VG I H +  AI
Sbjct: 1045 IDSIPILPGFW---AIYKVMGTGLFWA-LLLAVIVVGMIPHFVAKAI 1087


>12_02_0170 -
           14871985-14872110,14872239-14872454,14872541-14872588,
           14872960-14873061,14873144-14873254,14873388-14873483,
           14873579-14873697,14874014-14874095,14874149-14874218,
           14874320-14874382,14874487-14874602,14874731-14874817
          Length = 411

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 292 VERCRRAHLNDLENIPAFWILGALYVTTGPAVAW 393
           +ER  + +LND++ +P + +   L V  G  V W
Sbjct: 77  IERPAKLYLNDIKKLPKYNVTATLQVDFGVLVDW 110


>05_07_0107 -
           27730730-27730831,27730922-27730997,27731213-27731340,
           27731635-27731830,27731918-27732146,27732387-27732563,
           27733019-27733094
          Length = 327

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
 Frame = +3

Query: 384 SCVGHIIIPFIHCWKNCTFYR-------VRDRTSDVTGAWYR 488
           +C+    +P +H W N    R       ++ R  D+TG W++
Sbjct: 124 ACMSPFSMPILHEWPNAKLARRLYRWLELKSRDEDITGVWFK 165


>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 410 RNNNVAHATAGPVVTYNAPRIQKAGMFSKSL 318
           +++ ++H    PV+ YN PR  KA  +  SL
Sbjct: 563 KDDELSHHAGDPVLLYNYPRRYKAFFYCNSL 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,653,732
Number of Sequences: 37544
Number of extensions: 243549
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)