Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A02
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    37   0.002
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   6.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.1  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    24   9.1  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +1

Query: 4    RGLKMPQLEMKSNAKPSLYAYPAPLXXXXXXXXXXVTTAVLSIAAAKARRRAHGEGXXXX 183
            + L  P+    SN +P L+AYP             V TAVLS    KA+ RA        
Sbjct: 776  KNLNAPKFSFISNVRPKLFAYPPKSVQPTAKTVQKVETAVLS-TTVKAQARAKRAEREKA 834

Query: 184  XXXXXXXKMEVDE---EEKKPT 240
                   +M++D+   EEK+ T
Sbjct: 835  SKGSNDDEMKIDKKTTEEKEAT 856


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 142 KARRRAHGEGXXXXXXXXXXXKMEVDEEEKKPTKSPNPNITV 267
           KARRRA  E            K ++  E +KP+ S + N ++
Sbjct: 479 KARRRAEREKLRSEGLLGKKSKKKLLRESQKPSSSDSDNASL 520


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 238 LAFSLLHQLPF*K*MMK*HYLLNPHHALSYEL-SLLQYS 125
           +AFSLL  L         HY L P+H+  YEL  L+ YS
Sbjct: 392 VAFSLLQDLS--------HYGLRPNHSTLYELIRLIAYS 422


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 243 LCWLFLFFINFHFRSR 196
           +C+LF+ F+NF F +R
Sbjct: 95  ICFLFISFLNFIFSTR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.127    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,136
Number of Sequences: 5004
Number of extensions: 17047
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)