Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_A02
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    47   6e-10
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    52   3e-07
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    27   5.1  
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548...    27   9.0  

>08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,
            7586887-7587055,7587185-7587319,7587409-7587728,
            7587992-7588127,7588224-7588472,7588567-7588787,
            7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 46.8 bits (106), Expect(2) = 6e-10
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = +1

Query: 10   LKMPQLEMKSNAKPSLYAYPAPLXXXXXXXXXXVTTAVLS-IAAAKARRRAHGEGXXXXX 186
            LK+P+ E  SN KPSL+ YP P           + TA+LS  A AK+R +   E      
Sbjct: 805  LKVPKFEFLSNTKPSLFDYPKPTTQQTTTASVKLPTAILSTYAKAKSRAKKEAESKAQEK 864

Query: 187  XXX-----XXXKMEVDEEEKKPTKSPNPNITV 267
                        M+VD   +K    P P   +
Sbjct: 865  AEAPPSEDASTSMQVDGVAEKKAPEPEPTFQI 896



 Score = 33.5 bits (73), Expect(2) = 6e-10
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 361 PTFEILSNPARVMRQQLKVLSVVEGSGF 444
           PTF+IL+NPARV+  Q K +  +EG  +
Sbjct: 892 PTFQILTNPARVVPAQEKFIKFLEGGRY 919


>04_04_1094 - 30832987-30833316,30833530-30834273,30834484-30834742,
            30834821-30835041,30835127-30835375,30835460-30835595,
            30835864-30836207,30836589-30836758,30837080-30837185,
            30837267-30837330,30838462-30838616
          Length = 925

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 40/145 (27%), Positives = 57/145 (39%)
 Frame = +1

Query: 10   LKMPQLEMKSNAKPSLYAYPAPLXXXXXXXXXXVTTAVLSIAAAKARRRAHGEGXXXXXX 189
            LK+P+ E  S+AKPSL+ YP P           + TA+LS   AKA+ RA          
Sbjct: 731  LKVPKFEFLSHAKPSLFEYPKPTTQQTTTSAVKLPTAILS-TYAKAKSRA---------- 779

Query: 190  XXXXXKMEVDEEEKKPTKSPNPNITVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTF 369
                   + D E K   +    + +                                PTF
Sbjct: 780  -------KKDAESKANQEKATEDASGSSSSKATKTQEKDADAMQVDNAAEKKAPEPEPTF 832

Query: 370  EILSNPARVMRQQLKVLSVVEGSGF 444
            +IL+NPARV+  Q K +  +EGS +
Sbjct: 833  QILTNPARVIPTQEKFIKFIEGSRY 857


>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 166 HHALSYELSLLQYSIQQW*PFPFLHVSFLLEEQGTHRVM--VSHLISFL 26
           H A S  ++L  +++  W P P +   F+ E++  + ++  V H I  L
Sbjct: 21  HEAYSCSIALYNFALLTWIPLPLITPRFVTEQEVKYSIIAFVEHKIKDL 69


>02_05_1134 -
           34352154-34352375,34353683-34353746,34353820-34354859,
           34355193-34355261,34355502-34355606,34355992-34356161,
           34356244-34356351,34356397-34356525,34356577-34356681,
           34357186-34357475,34357575-34357679,34358195-34358289,
           34358474-34358569,34358660-34358782,34359120-34359174,
           34359254-34359417,34359881-34359971,34360180-34360334,
           34360823-34361002,34361314-34361487,34361776-34361917,
           34362023-34362325,34362443-34362522
          Length = 1354

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 372 NFK-QPSKGHEATVESTFS 425
           NFK QP K HE TV +TF+
Sbjct: 819 NFKKQPEKPHETTVHATFT 837


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,495,502
Number of Sequences: 37544
Number of extensions: 118197
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)