Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A01
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 33 0.063
03_03_0192 - 15308602-15308869,15309457-15309528,15310271-153103... 31 0.19
02_05_1206 + 34941293-34941562,34942052-34942153,34942249-349425... 31 0.34
08_02_1064 - 24033941-24034127,24034432-24034476,24035355-240354... 30 0.44
08_02_1559 - 27873345-27873407,27873549-27873830,27874162-278742... 30 0.59
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 29 0.78
01_06_1799 + 39948481-39948607,39948694-39948762,39948859-399489... 28 1.8
03_03_0130 - 14699658-14699723,14699828-14700109,14700444-147005... 28 2.4
09_03_0114 + 12467206-12467493 27 3.1
07_01_0413 - 3155080-3155274,3155628-3155933,3156062-3156163,315... 27 3.1
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732... 27 5.5
07_03_1378 + 26158233-26158562,26159075-26159176,26159551-261598... 26 7.2
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 33.1 bits (72), Expect = 0.063
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
++A+D LDGR++DGRE+ VQ A
Sbjct: 207 QKAVDRLDGRVVDGREIMVQFA 228
>03_03_0192 -
15308602-15308869,15309457-15309528,15310271-15310337,
15310449-15310528,15310636-15310714,15310815-15310890
Length = 213
Score = 31.5 bits (68), Expect = 0.19
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
++A+D LDGR +DGR++ VQ A
Sbjct: 71 QKAVDKLDGRTVDGRDIMVQFA 92
>02_05_1206 +
34941293-34941562,34942052-34942153,34942249-34942521,
34942863-34942913
Length = 231
Score = 30.7 bits (66), Expect = 0.34
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
+EAL SL+G L+GRE+RV +A
Sbjct: 206 DEALSSLNGTELEGREIRVNLA 227
>08_02_1064 -
24033941-24034127,24034432-24034476,24035355-24035421,
24035521-24035600,24035691-24035769,24035864-24035939
Length = 177
Score = 30.3 bits (65), Expect = 0.44
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
++A+D LDGR +DGR + VQ A
Sbjct: 71 QKAIDRLDGRNVDGRNIMVQFA 92
>08_02_1559 -
27873345-27873407,27873549-27873830,27874162-27874263,
27874402-27874872
Length = 305
Score = 29.9 bits (64), Expect = 0.59
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
++A+ +LDG+ LDGR LRV +A
Sbjct: 276 DDAISALDGQELDGRPLRVNVA 297
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 29.5 bits (63), Expect = 0.78
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E A+D L+GR++ GR+LRV A
Sbjct: 191 ESAIDQLNGRIIHGRKLRVDWA 212
>01_06_1799 +
39948481-39948607,39948694-39948762,39948859-39948965,
39949257-39949406
Length = 150
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
+ A+D++DG+ L+GR +RV A
Sbjct: 92 KSAMDAMDGKELEGRSIRVNFA 113
>03_03_0130 -
14699658-14699723,14699828-14700109,14700444-14700545,
14701038-14701385
Length = 265
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E A+ +LDG +DGR++RV +A
Sbjct: 235 ENAVSNLDGADMDGRQIRVTVA 256
>09_03_0114 + 12467206-12467493
Length = 95
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E A++ L+GR++ GR+LRV A
Sbjct: 70 ESAIERLNGRIIHGRKLRVDWA 91
>07_01_0413 -
3155080-3155274,3155628-3155933,3156062-3156163,
3156262-3156705
Length = 348
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
+ AL++LDG L+GR LR+ MA
Sbjct: 275 QAALEALDGVELEGRPLRLSMA 296
>12_02_0450 +
19172812-19172920,19173020-19173088,19173168-19173274,
19173874-19174365
Length = 258
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 71 ALDSLDGRMLDGRELRVQMA 130
A+ +LDG+ LDGR +RV A
Sbjct: 88 AITALDGKDLDGRNIRVNTA 107
>07_03_1378 +
26158233-26158562,26159075-26159176,26159551-26159850,
26160006-26160068
Length = 264
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 71 ALDSLDGRMLDGRELRVQMA 130
A+ +LDG LDGR++RV +A
Sbjct: 237 AISNLDGVDLDGRQIRVTVA 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,064,723
Number of Sequences: 37544
Number of extensions: 110340
Number of successful extensions: 292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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