Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_A01
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 34 0.033
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 34 0.033
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 28 2.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 2.2
AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-relat... 28 2.2
AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-relat... 28 2.2
AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin prote... 28 2.2
AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin prote... 28 2.2
AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin prote... 28 2.2
AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin prote... 28 2.2
AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin prote... 28 2.2
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 26 8.7
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E ALD DG+++DGRELRV +A
Sbjct: 74 EHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E ALD DG+++DGRELRV +A
Sbjct: 74 EHALDRTDGKLVDGRELRVTLA 95
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E A +++DGR++ GR++RV+ A
Sbjct: 164 ESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 65 EEALDSLDGRMLDGRELRVQMA 130
E A +++DGR++ GR++RV+ A
Sbjct: 164 ESAKEAIDGRIIHGRQVRVRFA 185
>AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-related
protein protein.
Length = 679
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-related
protein protein.
Length = 732
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin protein
1, isoform e protein.
Length = 718
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin protein
1, isoform b protein.
Length = 732
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin protein
1, isoform c protein.
Length = 702
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin protein
1, isoform d protein.
Length = 682
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin protein
1, isoform a protein.
Length = 679
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 134 NAPSVLGAPYRLTSAHQVSP 75
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 327 FNAWNENGSACDCENARASSWIRSVSGTATDPGC 226
+N NE S C CENA + S GTA C
Sbjct: 518 YNFTNECNSQCSCENAHLYP-VCSADGTAYFSPC 550
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,761,430
Number of Sequences: 27780
Number of extensions: 85642
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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