Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P22
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.4  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   5.8  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -2

Query: 296 FQYTFAISPNKLICQFLFNQNTAPTSHKVNNTTV*SISQSTFISNISFFRFLYRLRVLTS 117
           FQY+  ++  +L+ Q L    T P + K+ ++   +I+    +  ++F  F+    ++ S
Sbjct: 653 FQYSSTVTNKQLVLQVLIIMATVPVTLKIADSLQRNIAIPPILRLVAFGLFITSY-IIPS 711

Query: 116 HRNVFC 99
           H    C
Sbjct: 712 HHIRSC 717


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 465 LTKCINTNRPGY*VTPSIATFLYS 394
           L  C+ T+RP Y   PS A + Y+
Sbjct: 157 LETCVRTSRPVYLAVPSDAGYFYT 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,249
Number of Sequences: 5004
Number of extensions: 47493
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)