Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P22
         (564 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98657-1|CAA67226.1|  481|Homo sapiens lipopolysaccharide bindin...    33   0.69 
M35533-1|AAA59493.1|  477|Homo sapiens LBP protein.                    33   0.69 
BC022256-1|AAH22256.1|  477|Homo sapiens LBP protein protein.          33   0.69 
AL080249-1|CAC10462.1|  481|Homo sapiens lipopolysaccharide bind...    33   0.69 
AF105067-1|AAD21962.1|  481|Homo sapiens lipopolysaccharide-bind...    33   0.69 
AF013512-1|AAC39547.1|  481|Homo sapiens lipopolysaccharide bind...    33   0.69 

>X98657-1|CAA67226.1|  481|Homo sapiens lipopolysaccharide binding
           protein protein.
          Length = 481

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 307 SDKRFNTHSQ*VQINLYVNFCLTKTL--PQHRTRLTTQQFSPFLSPRL 170
           SD  FNT S       Y+NF +T  +  P    RLTT+ F PF+ PRL
Sbjct: 282 SDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFV-PRL 328


>M35533-1|AAA59493.1|  477|Homo sapiens LBP protein.
          Length = 477

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 307 SDKRFNTHSQ*VQINLYVNFCLTKTL--PQHRTRLTTQQFSPFLSPRL 170
           SD  FNT S       Y+NF +T  +  P    RLTT+ F PF+ PRL
Sbjct: 278 SDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFV-PRL 324


>BC022256-1|AAH22256.1|  477|Homo sapiens LBP protein protein.
          Length = 477

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 307 SDKRFNTHSQ*VQINLYVNFCLTKTL--PQHRTRLTTQQFSPFLSPRL 170
           SD  FNT S       Y+NF +T  +  P    RLTT+ F PF+ PRL
Sbjct: 282 SDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFV-PRL 328


>AL080249-1|CAC10462.1|  481|Homo sapiens lipopolysaccharide binding
           protein protein.
          Length = 481

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 307 SDKRFNTHSQ*VQINLYVNFCLTKTL--PQHRTRLTTQQFSPFLSPRL 170
           SD  FNT S       Y+NF +T  +  P    RLTT+ F PF+ PRL
Sbjct: 282 SDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFV-PRL 328


>AF105067-1|AAD21962.1|  481|Homo sapiens lipopolysaccharide-binding
           protein protein.
          Length = 481

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 307 SDKRFNTHSQ*VQINLYVNFCLTKTL--PQHRTRLTTQQFSPFLSPRL 170
           SD  FNT S       Y+NF +T  +  P    RLTT+ F PF+ PRL
Sbjct: 282 SDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFV-PRL 328


>AF013512-1|AAC39547.1|  481|Homo sapiens lipopolysaccharide binding
           protein protein.
          Length = 481

 Score = 33.1 bits (72), Expect = 0.69
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 307 SDKRFNTHSQ*VQINLYVNFCLTKTL--PQHRTRLTTQQFSPFLSPRL 170
           SD  FNT S       Y+NF +T  +  P    RLTT+ F PF+ PRL
Sbjct: 282 SDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFV-PRL 328


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,929,905
Number of Sequences: 237096
Number of extensions: 1504483
Number of successful extensions: 2365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2365
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)