Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P22
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z78199-2|CAB54275.1|  582|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF108229-2|AAF17301.1|  582|Caenorhabditis elegans VAB-8S protein.     27   9.3  
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     27   9.3  

>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical
           protein F55B11.1 protein.
          Length = 1358

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 138 VKESEKTNITYKRGLRNGLNCCVVNLVRCWGS 233
           V ES    +T + G   G NCC V    C GS
Sbjct: 174 VDESGTLKVTEENGCGMGENCCKVKKTACGGS 205


>Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical
           protein K10D3.3 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 239 QNTAPT-SHKVNNTTV*SISQSTFISNISFFRF 144
           QNT+P+ +HK++     S+ + +FI  ISFF F
Sbjct: 2   QNTSPSETHKMSTHYEHSLQRFSFIRPISFFSF 34


>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 VKESEKTNITYKRGLRNGLNCCVVNLVRCWGSVLV 242
           V+E E+  +  K+ ++ GLNCC    +   GS +V
Sbjct: 680 VREIEENKLKNKKKIKLGLNCCQQQSMISSGSTVV 714


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 VKESEKTNITYKRGLRNGLNCCVVNLVRCWGSVLV 242
           V+E E+  +  K+ ++ GLNCC    +   GS +V
Sbjct: 680 VREIEENKLKNKKKIKLGLNCCQQQSMISSGSTVV 714


>Z78199-2|CAB54275.1|  582|Caenorhabditis elegans Hypothetical
           protein K12F2.2b protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 VKESEKTNITYKRGLRNGLNCCVVNLVRCWGSVLV 242
           V+E E+  +  K+ ++ GLNCC    +   GS +V
Sbjct: 196 VREIEENKLKNKKKIKLGLNCCQQQSMISSGSTVV 230


>AF108229-2|AAF17301.1|  582|Caenorhabditis elegans VAB-8S protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 VKESEKTNITYKRGLRNGLNCCVVNLVRCWGSVLV 242
           V+E E+  +  K+ ++ GLNCC    +   GS +V
Sbjct: 196 VREIEENKLKNKKKIKLGLNCCQQQSMISSGSTVV 230


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 138 VKESEKTNITYKRGLRNGLNCCVVNLVRCWGSVLV 242
           V+E E+  +  K+ ++ GLNCC    +   GS +V
Sbjct: 680 VREIEENKLKNKKKIKLGLNCCQQQSMISSGSTVV 714


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,864
Number of Sequences: 27780
Number of extensions: 260934
Number of successful extensions: 526
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)