Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P21
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 72 7e-14
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 29 0.68
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 29 0.68
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 29 0.68
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 6.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 6.3
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 6.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 8.3
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 25 8.3
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 8.3
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 71.7 bits (168), Expect = 7e-14
Identities = 41/192 (21%), Positives = 90/192 (46%), Gaps = 1/192 (0%)
Frame = +2
Query: 14 VRHEVIKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEFYGDIYKNSKDDKVK 193
++ ++ + +GN+V + H +A V++ A+ EF +++ + EFYG ++ KD
Sbjct: 226 MKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYGPEFQVFKDRTQD 285
Query: 194 TLTDTYK-DSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSAEDRAELIS 370
D D PE + +++Q+ I+ + K + H + ++I + + EL++
Sbjct: 286 IHIDKLLIDHPEKRPSIMQNLWKTIEGSIAKGSIGFTMVHRAMLEFINHADSNEAKELLN 345
Query: 371 TLSPSIVPISNSLPGVNAASICVWQGTNKDKKTILKVVKEHAVPLSKHKSGYRLLITIFD 550
I ++ G A KD+K +LK ++ + + +K G+ +++ D
Sbjct: 346 LTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRPYLIETAKDSYGHLVVVAALD 405
Query: 551 SVDDTVLVKKTI 586
DDT++ K +
Sbjct: 406 CTDDTIMTGKLL 417
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 431 ICVWQGTNKDKKTILKVVK-EHAVPLSKHKSGYRLLITIFDSVDDTV 568
+C +QG + + +L + HA+PL +H YRL + ++D TV
Sbjct: 114 LCYYQGLHDIAQILLLTLPFSHALPLMEHLVFYRLRDFMLPTLDGTV 160
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 28.7 bits (61), Expect = 0.68
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 338 CSAEDRAELISTLSPSIVPISNSLPGVNAASICVWQGTNKDKKTILKVVKEHAVPLSKH 514
C+A D E T+ S IS G ++A +++ N D L + E +PLS+H
Sbjct: 489 CAANDDDEFAQTVCKSFFYISKE-SGTDSALKFLYKCLNSDSSADLYSLLEEHLPLSEH 546
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 14 VRHEVIKKFFGNIVSLATHSISAPVLDYAYGEFATK 121
V + K +FGN L H + P+ DY +FA K
Sbjct: 738 VNSDTFKYYFGNAGHLHIHGRTFPIKDYYIEDFAPK 773
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 26 VIKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEF 151
+I+KFFGNI L+ S+ ++ A+ + M QEF
Sbjct: 676 IIEKFFGNICKLSLQKFSSNAIEQCI-RTASPSTREQMLQEF 716
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 4.8
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Frame = +2
Query: 224 EMKSAMLQSCKANIQRILDKNLHDGELFHSIL-------YDYIRECSAEDRAELISTLSP 382
E SA+ Q K+ I + L D L H++ +++ A + + SP
Sbjct: 173 ETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNFLNPMLALSFFQAVKKHSP 232
Query: 383 SIVPISNSLPGVNAASICVWQGTNKDKKTILKVVKE 490
+ S P N A + VWQG KD +L ++ E
Sbjct: 233 NAYVRGCSAPVYNQAILSVWQGC-KDPNFVLHLLGE 267
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 4.8
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Frame = +2
Query: 71 SISA--PVLDYAYGEFATKKEKIYMQQEFY-GDIYKNSKD--DKVKTLTDTYK--DSPEM 229
S+SA P+L + F+TKKEK Q D++ ++ +K+L + +P
Sbjct: 6 SLSAVEPLLIFPAAPFSTKKEKSTFQNNLISSDVFSSALKPLSPLKSLVADFSTHSNPSK 65
Query: 230 KSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSAEDRAELISTLSPSIVPISNS 406
+ ++ K N + L++ + + L I C++ + S LSPS I N+
Sbjct: 66 DNQLISPPKINHREFLNEE-KESDTQTRYLKQLINICNSPSKNHETS-LSPSKSTIDNN 122
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 306 NNSPSCRFLSKIRCILALQDCNIADF----ISGLSLYVSVNVFT 187
+ + SC F+S C++ LQ I + + GL + S+ +F+
Sbjct: 14 DTATSCHFISSENCLVLLQALKINIYLCSEVHGLQFFTSIPLFS 57
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 6.3
Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 12/182 (6%)
Frame = +2
Query: 5 EDFVRHEVIKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEFYGDIYKNSKDD 184
++F + + G+ V +A H+ + + E+A + +M + Y K +
Sbjct: 282 DNFQKEAIYHLEMGDSVFVAAHTSAGKTV---VAEYAIALAQKHMTKAIYTSPIKALSNQ 338
Query: 185 KVKTLTDTYKD----SPEMKSAMLQSCKANIQRILDKNLHDG-ELFHSI---LYDYIREC 340
K + ++D + +++ SC IL L+ G +L + ++D +
Sbjct: 339 KFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVIFDEVHYV 398
Query: 341 SAEDRA----ELISTLSPSIVPISNSLPGVNAASICVWQGTNKDKKTILKVVKEHAVPLS 508
+ +R E+I L P + I S N W G K K + + VPL
Sbjct: 399 NDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPLE 458
Query: 509 KH 514
+
Sbjct: 459 HY 460
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 314 ILYDYIRECSAEDRAELISTLSPSIVPIS 400
+L DYIR+CS A ++ + ++ IS
Sbjct: 695 VLLDYIRKCSTSKEARIVYIILQNLPNIS 723
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 507 LNGTACSFTTFNIVFLSLLVPCQTHMLA 424
+N + C F + I SL+VP T +LA
Sbjct: 1059 INPSGCVFVSLGIYLSSLIVPLLTGVLA 1086
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 8.3
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +2
Query: 140 QQEFYGDIYKNSKDDKVK----TLTDTY--KDSPEMKSAMLQSCKANIQRILDKNLHDGE 301
+ ++ D+Y VK T+ D D + M Q + +QR + N H+ E
Sbjct: 445 KNSYHSDLYNFGSSLTVKGGILTVADDLLKNDGKKFIEMMEQLAERRMQREDNSNFHEPE 504
Query: 302 LFHSIL-YDYIRECSAED 352
L+ S L YD E ED
Sbjct: 505 LYESGLEYDEDEEEDEED 522
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 510 LLNGTACSFTTFNIVFLSLLVPCQTHMLAALTP-GRE 403
L GT CS N+ L+L P LA+LTP GR+
Sbjct: 9 LFMGTGCSSGIPNVCCLTLEKPTCRTCLASLTPEGRK 45
>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 179 DDKVKTLTDTYKDSPEMKSAMLQS 250
D + LTD +DSP +++A LQS
Sbjct: 149 DTNLSFLTDVQRDSPIIENAPLQS 172
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 285 FLSKIRCILALQDCNIADFISGLSLYVSVNVFTLSS 178
F+SK R I Q I +++ S VS VFTL S
Sbjct: 551 FISKPRSIGDAQKLEILEYLQSQSSTVSNQVFTLLS 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,134
Number of Sequences: 5004
Number of extensions: 51709
Number of successful extensions: 194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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