Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P21
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940... 51 8e-07
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 31 0.69
03_01_0314 - 2477593-2480685 31 0.69
03_06_0290 + 32878040-32880193,32881607-32881720 31 0.92
04_03_0641 + 18261332-18262423 30 1.2
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 30 1.6
08_02_0191 + 14041201-14043894,14044354-14044632 29 2.8
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 29 3.7
11_06_0074 - 19821699-19823702 28 4.9
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 4.9
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 28 4.9
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 28 6.5
>03_06_0555 -
34693067-34693196,34693450-34693688,34693956-34694033,
34694057-34694131,34694667-34694831,34695101-34695151,
34695250-34695300,34695462-34695533,34695736-34695948,
34696064-34696214,34696376-34696490,34696665-34696748,
34696841-34696964,34697064-34697145,34697238-34697299,
34697787-34697840,34697944-34698147
Length = 649
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +2
Query: 380 PSIVPISNSLPGVNAASICVWQGTNKDKKTILKVVKEHAVPLSKHKSGYRLLITIFDSVD 559
P +V I N+ G+ C+ G+ KD+K I+K +K H + L+ G LL+ I VD
Sbjct: 338 PLLVRIMNTREGLKIGVSCLKHGSAKDRKKIIKSLKGHIMKLALSDYGCILLVAILSVVD 397
Query: 560 DTVLVKKTIV 589
DT LV K ++
Sbjct: 398 DTKLVTKIVI 407
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Frame = +2
Query: 29 IKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEFYG---DIYKNSKDDKVKTL 199
I G + L H+I A V+D+AY + AT +K + E Y ++ + K +L
Sbjct: 185 ISSLHGRVAKLLRHTIGASVVDFAY-QLATPPQKRRLLLELYSTELQLFTDLTGQKTHSL 243
Query: 200 TDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSAEDRAELISTLS 379
+T + KS++LQ I IL+K + + + H+ + +Y ++I
Sbjct: 244 LETISNLGLQKSSVLQHMTTVIYPILEKGIVEYPIVHTAVLEYFTIADKTSATDVIRQFI 303
Query: 380 PSIVPISNSLPG 415
P + S+++ G
Sbjct: 304 PLLTQGSSAIDG 315
>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 31.1 bits (67), Expect = 0.69
Identities = 24/107 (22%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Frame = +2
Query: 14 VRHEVIKKFFGNIVSLATHSISAPVLD--YAYGEFATKKEKIYMQQEFYGDIYKNSKDDK 187
VR +IKKF G +V+++ ++ V++ +G + +K+KI + D+ ++ + +
Sbjct: 1046 VRSAIIKKFIGRVVAMSKQKFASNVIEKCLIFGSY-DEKQKIINEVIGTTDLVRSGETEA 1104
Query: 188 -VKTLTDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYD 325
V + D Y + K ++++C ++++ + L HS+L+D
Sbjct: 1105 LVVMVNDQYANYVVQK--VIETCDEWQRKLILRRL---RAHHSLLHD 1146
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 317 LYDYIRECSAEDRAELISTLSPSIVPISNSLPGVNAASICVWQGTNKDKKTILKVVKEHA 496
L I C+A D A + + S+V L G ++A C W+G D + + + A
Sbjct: 18 LLSCIAVCNAGDEAAALLAIKASLVDPLGELKGWSSAPHCTWKGVRCDARGAVTGLNLAA 77
Query: 497 VPLS 508
+ LS
Sbjct: 78 MNLS 81
>03_06_0290 + 32878040-32880193,32881607-32881720
Length = 755
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 516 LCLLNGTACSFTTFNIVFLSLL 451
L + GT+C+FTT+N +F +LL
Sbjct: 539 LAVCTGTSCTFTTYNTIFRALL 560
>04_03_0641 + 18261332-18262423
Length = 363
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 227 MKSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSAEDRAELISTLSPSIVPISNS 406
+ S LQ CK N+Q + D +++ SI Y+ E S+ + S+LS + + N+
Sbjct: 162 LMSIPLQVCKNNLQALEDLHIYQCSSLTSI---YVSEASSRHPVGVFSSLSSVTISLCNA 218
Query: 407 L 409
L
Sbjct: 219 L 219
>10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 29.9 bits (64), Expect = 1.6
Identities = 30/120 (25%), Positives = 49/120 (40%)
Frame = +2
Query: 5 EDFVRHEVIKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEFYGDIYKNSKDD 184
E+ V HE IK +I SLA HS S P + + F K E Y + S+
Sbjct: 693 ENKVHHEPIKDSLADICSLAPHSSSDPDFEGSRDAFVVKTTVQMCSMEEYEQL--KSEKR 750
Query: 185 KVKTLTDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSAEDRAEL 364
K++ ++ E + + N++ + K L E +S+ ++ C AE L
Sbjct: 751 KLEMELAKCNETIECRKLEFSLMEKNMEELTSK-LSACEKSNSLTETQLK-CMAESYKSL 808
>08_02_0191 + 14041201-14043894,14044354-14044632
Length = 990
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 278 DKNLHDGELFHSILYDYIRECSAEDRAELISTLSP---SIVPISNSLPGVNAASICVWQG 448
DK H L H ++Y + E RA+++ P I+ ++NSL + + S C+ G
Sbjct: 803 DKRTHLQVLLHQLMYKKSYQMY-ETRAQVLKLTRPWNLGILLLNNSLMAIYSRSCCIDLG 861
Query: 449 TNK 457
T++
Sbjct: 862 TSR 864
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 185 KVKTLTDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHS 313
KVKT D KD P M A + + + +LD + E FH+
Sbjct: 771 KVKTSYDANKDLPSMDPAATITERPSPVSVLDSSFDQEEFFHT 813
>11_06_0074 - 19821699-19823702
Length = 667
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 158 DIYKNSKDDKVKTLTDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYD 325
+I+ + +DDK K + D Y + ++ +N ++ K GE+F +L D
Sbjct: 8 NIHVSQRDDKAKWIIDNYSNIRSFTEHDIEKITSNYSTLIGKG-GFGEVFRGVLDD 62
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 167 YKCLHKTPVAYISSLFS*QTPHMHNQAQVQI*NELPRKQYSQKISLLP 24
+ CL K + YIS + P M+N +++ ++ R++ + LLP
Sbjct: 747 FGCLKKLVIGYISRIPKWINPSMYNLVHLELKVDIVREEDLHSLELLP 794
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 341 SAEDRAELISTLSPSIVPISNSLPGVNAASICVWQGTNKDKK 466
S++ ++ + P ++P+S L ++A SIC+W+ + K+
Sbjct: 351 SSQSSSKSNPAILPIVLPVSIGLGIISAISICLWRNRSSLKR 392
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 248 SCKANIQRILDKNLHDGELFHSILYDYIRECSA 346
SCK ++ K +H+G F +Y ++E S+
Sbjct: 344 SCKPGTNGMIPKRIHEGTAFRDGMYSMLQEISS 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,283,975
Number of Sequences: 37544
Number of extensions: 275642
Number of successful extensions: 755
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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