Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P21
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...   107   4e-24
AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    30   1.1  
Z73102-3|CAA97409.1|  337|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   3.3  
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    28   5.8  
M77697-1|AAA27896.3|  273|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate...    27   7.6  

>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score =  107 bits (258), Expect = 4e-24
 Identities = 57/192 (29%), Positives = 100/192 (52%)
 Frame = +2

Query: 17  RHEVIKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEFYGDIYKNSKDDKVKT 196
           R  +I  F G+  +L     +A VL+YAY +FA   ++  +  EFYG  +   ++D +++
Sbjct: 343 RDIIINAFRGHAPTLLRIKHAAEVLEYAYNDFANAHQRYNIITEFYGKEFILFREDNIRS 402

Query: 197 LTDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSAEDRAELISTL 376
           LT+   + PE K  +L+     I  + +K      + H ++ D+   C  E +  L+ +L
Sbjct: 403 LTEILAEKPEKKVVILKHLDEVIGAVNEKETLRLSILHKLMLDFFDNCDEEKKINLLDSL 462

Query: 377 SPSIVPISNSLPGVNAASICVWQGTNKDKKTILKVVKEHAVPLSKHKSGYRLLITIFDSV 556
              I    ++  G   A   +W    K++K I+K  K+ +V  +    G+R+L+ +FD+V
Sbjct: 463 KDKIPEFIHTPDGAKLAIKLIWFAPVKERKLIVKNFKDLSVKAAMEHYGHRVLLALFDTV 522

Query: 557 DDTVLVKKTIVS 592
           DDTVL+ K IVS
Sbjct: 523 DDTVLLNKVIVS 534


>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 20  HEVIKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEFYGDIYKNSKDDKVKTL 199
           +E +K F+  ++    H      LD  Y        K+YM   F+G +   + ++KV+++
Sbjct: 146 NEPVKHFYSGMLISGQHGTDFSHLDLGYPITTVLGTKLYMDPNFFG-VKVTTSNNKVESI 204

Query: 200 TD 205
            D
Sbjct: 205 AD 206


>Z73102-3|CAA97409.1|  337|Caenorhabditis elegans Hypothetical
           protein B0035.2 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 119 KKEKIYMQQEF--YGDIYKNSKDDKVKTLTDTYKDSPEMK 232
           K+EK+  ++ F      Y+  KDD+ KT  D Y D P+ +
Sbjct: 72  KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQR 111


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 170  NSKDDKVKTLTDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSA 346
            +SK + +  L  TY +     S  L+      + +L + LHD + +H  + D+  + SA
Sbjct: 1013 SSKIEALSQLNRTYNEENRNLSRQLEILLTQNKELLQRALHDKDQYHLEMKDFQDQLSA 1071


>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
           protein R09H3.1 protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 167 KNSKDDKVKTLTD-TYKDSPEMKSAMLQSCKANIQRILDKNLHD 295
           KN   D  +T+    YK SP +K+ + ++ K  ++++  K +HD
Sbjct: 395 KNMNVDDERTIVPFLYKLSPSIKNELSKTTKKGLEKLTWKEVHD 438


>M77697-1|AAA27896.3|  273|Caenorhabditis elegans Hypothetical
           protein B0303.2 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = +2

Query: 182 DKVKTLTDTYKDSPEMKSAMLQSCKANIQRILDKNLHDGELFHSILYDYIRECSAEDRAE 361
           D V +     + S E    M    +  ++ +LD N+H+  +  SI++    +    D+ +
Sbjct: 118 DNVCSWIANIEASMETGKQMQNKTRKLMRAVLDVNVHESPVVQSIVWKENEQVQVPDKFQ 177

Query: 362 LISTL 376
           ++ST+
Sbjct: 178 VVSTV 182


>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
            protein 1, isoform a protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +2

Query: 374  LSPSIVPISNSLPGVNAASICVWQG----TNKDKKTILKVVKEHAVPLSKHKSGYRLLIT 541
            ++PS+  + NSL  VN A  C   G    +N D   + + +  H  P ++  S   L+ T
Sbjct: 891  VAPSLEDVGNSLLAVNHAMKCGGDGGGCVSNNDAPILRQYLTNHQGPATRIDSVRELMRT 950

Query: 542  IFDS 553
              DS
Sbjct: 951  RTDS 954


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,086
Number of Sequences: 27780
Number of extensions: 279661
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)