Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P21
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.2  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   9.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.1  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 308 HSILYDYIRECSAEDRAELISTLSPSIVPISNSLPGVNAASICVWQ 445
           H+    Y+   +  D   LIS L P I  I +  P V   + C+ Q
Sbjct: 85  HTATNYYLFSLAVSDLLLLISGLPPEIYYIWSHFPYVFGEAFCIIQ 130


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 264 ILALQDCNIADFISGLSLYVSVNVFTLSSFE 172
           +L +  C I  ++S +S YVSV      S E
Sbjct: 108 VLGVSLCKIRAYVSEMSSYVSVLTIVAFSME 138


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +2

Query: 20  HEVIKKFFGNIVSLATHSISAPVLDYAYGEFATKKEKIYMQQEFYGDIYKNSKDDKVKTL 199
           HEV  +F+GNI ++  + +         G+      + Y++ +      K +K+D ++ +
Sbjct: 123 HEVCGRFYGNIQTVXNNWLLLEGHSIGIGD-TIADPQTYLEIQ---KXIKKAKEDVIEVI 178

Query: 200 TDTY--KDSPEMKSAMLQSCKANIQRILD 280
              +  +  P   + + Q+ +  + RIL+
Sbjct: 179 QKAHNMELEPTPGNTLRQTFENQVNRILN 207


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 548 RI*LSIICILIYVCSMVQHVPLP 480
           ++ + I  +L  +C+   +VPLP
Sbjct: 2   KVVIFIFALLATICAAFAYVPLP 24


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 128 SLFS*QTPHMHNQAQVQI*NELPRKQYSQKISLL 27
           +LFS  TP           N+L  K+++ KIS L
Sbjct: 358 TLFSNVTPKFPRNIDEYNNNDLDTKKWNNKISAL 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,751
Number of Sequences: 438
Number of extensions: 3297
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)