Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P17
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.11
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.35
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 2.5
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 26 3.3
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 25 4.3
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 25 5.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.5
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 7.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 24 9.9
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.11
Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 3/114 (2%)
Frame = +1
Query: 112 SENSELGTSIPSLDTGRLTNESNFVRRLSTASVHSGGGGDDALIRASLRRRP--HKAVPP 285
S NS TS S G T S+ + + G GD + + P + V P
Sbjct: 557 SVNSTTATSASSTPFGNSTITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLSNSTVAP 616
Query: 286 SHRNSYQGLEGDTGLPAVSTSTPMF-GTAGTRRTVYVADDETNVNLNTKPQSTP 444
+ + G +GLP S STP+ T T + T L T STP
Sbjct: 617 TSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTP 670
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 29.1 bits (62), Expect = 0.35
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 196 STASVHSGGGGDDALIRASLRRRPHKAVPPSHRNSYQGLEGDTGLPAVSTSTPMFGTAGT 375
+++S H+ G+ +LI +S + P SY G TS + GT+ T
Sbjct: 408 NSSSGHNDNEGNHSLILSSKTKSPQLFNNEKKDESYSGFSNTNSYAIEETSRALMGTSKT 467
Query: 376 RR 381
R+
Sbjct: 468 RK 469
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 2.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 RPHKAVPPSHRNSYQGLEGDTGLPAVSTSTPMFGTAGT-RRTVYVADDETNVNLNTKPQS 438
RPHK P HRNS L+ + S S F T T + +V D + + ++N Q+
Sbjct: 652 RPHKVHPSFHRNSDSKLKLEPSSKEKSGSM-FFNTLRTVKDKSHVHDTQRSSDVNFSRQN 710
Query: 439 TPIQENPT 462
+P+
Sbjct: 711 GTRSHSPS 718
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 391 HKRYVEYQQSRT*EWTSIR--LVILYHLLNPDNYSDEKVELLYEV 263
+KR+ + S W+S+R + NPD+Y+ +K+ LL ++
Sbjct: 416 NKRFSLSEASSFNVWSSVRKRAIETIEFFNPDSYNVKKIRLLNDL 460
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 419 RLTFVSSSAT*TVRRVPAVPNIGVDVDTAGNPVSPSKP 306
+ FVS +A T + V I VD G+ +PSKP
Sbjct: 146 KTVFVSPAAVQTYLKSVGVNPIIVDFSAPGSATAPSKP 183
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 5.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -2
Query: 306 LITIPMRR--WNCFMRSSS*RSTYEGIIPPASTMN 208
LI P RR W +R S + EG PPA +N
Sbjct: 102 LIIFPWRRRSWARKLRRSEINGSAEGYCPPAEDLN 136
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 444 WSTLRFGIQIDVCFVISYINGTSSTSSPEHRSGRRY 337
W L +Q+ C ISY ++S + HRS R +
Sbjct: 285 WKRLDLRLQLIQCLAISYPLWSNSETWDPHRSIRSF 320
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 328 ILYHLLNPDNYSDEK--VELLYEVFFLEKHV*GHHPPRLHY 212
+++H+L D+ K V++LY ++ LEK + RL++
Sbjct: 36 LIFHILAKDSQFLAKNGVQILYAIYLLEKELARFKSARLNF 76
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.2 bits (50), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 361 RT*EWTSIRLVILYHLLNP-DNYSDEKVELLY 269
RT W S+R LY +N NYS ++LLY
Sbjct: 819 RTRIWASLRTQTLYRTINGFSNYS-RAIKLLY 849
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.125 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,023
Number of Sequences: 5004
Number of extensions: 35949
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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