Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P17
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0174 - 18728199-18731411 33 0.15
12_02_1188 + 26801833-26802225 30 1.1
06_01_0561 - 3983308-3983564,3983652-3983775 29 1.4
05_07_0012 + 27041475-27042476 29 2.4
08_02_0991 - 23377621-23378364 28 3.2
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 28 4.3
09_06_0080 + 20736778-20737005,20737104-20737482,20737572-207376... 28 4.3
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 28 4.3
01_03_0018 - 11686420-11687460 28 4.3
12_02_0269 - 16617292-16618852,16622763-16623562 27 5.6
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 27 5.6
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 27 5.6
04_04_0556 + 26221296-26221758,26223097-26223260,26223337-262234... 27 5.6
02_01_0302 - 2021221-2023305 27 5.6
01_01_0941 - 7423284-7423366,7423479-7423749,7423844-7423913,742... 27 5.6
12_02_0886 + 24014478-24014565,24014929-24015413 27 7.4
06_03_0746 - 24111579-24112348,24113164-24113256,24113355-241134... 27 7.4
11_06_0326 - 22382001-22383248 27 9.8
06_01_1170 - 10002650-10004122 27 9.8
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 27 9.8
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 27 9.8
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 32.7 bits (71), Expect = 0.15
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +1
Query: 217 GGGGDDALIRASLRRRPHKAVPPSHRNSYQGLEGDTGLPAVSTSTPMFGTAGTRRTVYVA 396
GGGGDDA + + +R+ +A + + S L D G VS S G RR V
Sbjct: 77 GGGGDDAGV-SEYQRQMQEAAAMAKKQSTIKLLDDDGEIGVSASPSSGGRKRFRRKA-VG 134
Query: 397 DDETNVNLNTKPQSTPIQE 453
+D+ + N + + +P E
Sbjct: 135 EDDDDAGRNARRRRSPDDE 153
>12_02_1188 + 26801833-26802225
Length = 130
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 196 STASVHSGGGGDDALIRASLRRRPHKAVPPSHRNSYQGLEGDTGLPAVS 342
S A GGGG + R+S H+ VP H Y EGD G A +
Sbjct: 24 SPAPRRGGGGGGSSGKRSSSAAAAHEGVPEGHVPVYVVGEGDGGEAAAA 72
>06_01_0561 - 3983308-3983564,3983652-3983775
Length = 126
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 217 GGGGDDALIRASLRRRPHKAVPPSHRNSYQGLEGDTGLPAVSTSTPMFGTAG 372
GGGG+ A R SLRR PP ++ G+E + P F + G
Sbjct: 66 GGGGEKAAQRRSLRRVGLHRTPPPPTSNDGGIESISPPPPPEQDGQFFSSTG 117
>05_07_0012 + 27041475-27042476
Length = 333
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +1
Query: 127 LGTSIPSLDTGRLTNESNFVRRLSTASVHSG----GGGDD 234
LGTS S L +S+ RR S AS S GGGDD
Sbjct: 111 LGTSTSSSSLSHLHQQSSSTRRQSNASTSSSSGGIGGGDD 150
>08_02_0991 - 23377621-23378364
Length = 247
Score = 28.3 bits (60), Expect = 3.2
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = +1
Query: 148 LDTGRLTNE-SNFVRRLSTASVHSG----GGGDDALIRASLRRRPHKAVPPSHRNSYQGL 312
LD +L + ++ V RL AS S GGGD + R LRRR H + R +G
Sbjct: 92 LDIAQLVKKYASMVERLFFASSLSNNRRRGGGDQSGRRTELRRRRHSFIISGLR---RGA 148
Query: 313 EGDTGLPAV-STSTPMFGTAGTRRTVYVADDETNVNLNTKPQSTPIQE 453
P+ + +F + R VA +V ++T + + ++E
Sbjct: 149 AAAAAAPSKRHEGSWLFSAPASLRGSPVASGHLSVKVSTSSEESTMEE 196
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 103 FKKSENSELGTSIPSLDTGRLTNESNFVR 189
F SENS LG SIP GRLT + NF+R
Sbjct: 233 FDASENSNLGGSIPD-TLGRLT-KLNFLR 259
>09_06_0080 +
20736778-20737005,20737104-20737482,20737572-20737615,
20738491-20738612,20738701-20738809,20738933-20739046
Length = 331
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 142 PSLDTGRLTNESNFVRRLSTASVHSGGGGDDALIRASLRRRPHKAV 279
P D TN + ++ A+ + GGDD + A+ RRP A+
Sbjct: 15 PGADASPATNPAPPAAAVAVAAAAADAGGDDDVAAAAEARRPFTAL 60
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 109 KSENSELGTSIPSLDTGRLTNESNFVRRLSTASVHSGGGG 228
KS + +LG + SL G E +F + A VH GGG
Sbjct: 16 KSFSFQLGEFLQSLKKGDRGTELSFAAAATVAVVHGRGGG 55
>01_03_0018 - 11686420-11687460
Length = 346
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +1
Query: 175 SNFVRRLSTASVHSGGGG-----DDALIRASLRRRPHKAVP 282
+ +++ L A+VH GGG DDA + R PH+ VP
Sbjct: 84 TTWLKALLFATVHRDGGGAGGVEDDAALAQLRARNPHQLVP 124
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 349 WTSIRLVILYHLLNPDNYSDEKVELLYEVFFLEK 248
WT R + + DNYS E EL+ + L+K
Sbjct: 327 WTDSRSLFFRRIYGSDNYSPELEELIIAIDILKK 360
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 27.5 bits (58), Expect = 5.6
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 298 SYQGLEGDTGLPAVSTSTPMFGTA 369
SY G++G+ G +V++ +P+F +A
Sbjct: 48 SYNGMDGNNGFSSVTSVSPVFASA 71
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 157 GRLTNESNFVRRLSTASVHSGGGGDDALIRASLRRRPHKAVPPSHRNSYQG 309
G ++ ++RR +S+ GGG + R SL R P AV R ++G
Sbjct: 140 GNPRSDMRWLRRGDHSSMERGGGSSSSR-RRSLSREPSSAVQERGRGLHRG 189
>04_04_0556 +
26221296-26221758,26223097-26223260,26223337-26223434,
26224031-26224220,26224321-26225424
Length = 672
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 214 SGGGGDDALIRASLRRRPHKA 276
SGGGGD+ ++ AS R H A
Sbjct: 8 SGGGGDEEMVEASTLRHRHGA 28
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 265 PHKAVPPSHRNSYQGLEGDTGLPAVSTSTPMFG 363
PH PPSH +S G G P STSTP G
Sbjct: 641 PHNCSPPSHGSSTGGGHGGGHPP--STSTPPGG 671
>01_01_0941 -
7423284-7423366,7423479-7423749,7423844-7423913,
7424034-7424329,7426097-7426642
Length = 421
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 187 RRLSTASVHSGGGGDDALIRASLRRRPHKAVPPSHRNSYQ 306
RR + + GGGG D +R + RRP + + S Q
Sbjct: 9 RRSARIAAAHGGGGGDTTLRERILRRPDGYIGSPEKRSTQ 48
>12_02_0886 + 24014478-24014565,24014929-24015413
Length = 190
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 184 VRRLSTASVHSGGGGDDALIRAS-LRRRPHKAVPPSH 291
VRR ++S GGGG IR S RRR ++V H
Sbjct: 106 VRRPPSSSSRGGGGGGGGTIRTSRSRRRRRRSVVWEH 142
>06_03_0746 -
24111579-24112348,24113164-24113256,24113355-24113460,
24113587-24113783,24113893-24114103,24114198-24114273,
24114347-24114426,24114659-24114754,24114894-24114965,
24115067-24115264,24115273-24115569
Length = 731
Score = 27.1 bits (57), Expect = 7.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +1
Query: 112 SENSELGTSIPSLDTGRLTNESNFVRRLSTASVH--SGGGGDDALIRASLRRRPHKAVPP 285
S NS+L T + ++G T + V S A + G GG DA +RA+ R P +
Sbjct: 523 SYNSQLVTL--TQESGGKTMLLSTVNDTSLAMLERPEGAGGTDAAVRATFRVVPPGSRAE 580
Query: 286 SHRNSYQGL-EGDTGLPAVSTSTPMFGTAGT 375
+ + G EG L + + FG GT
Sbjct: 581 LRQRAGAGAGEGAARLKVAAATIEPFGLPGT 611
>11_06_0326 - 22382001-22383248
Length = 415
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 193 LSTASVHSGGGGDDALIRASLRRRPHKAVPPSHRNSY-QGLEGDTGLPAVSTSTPMFG 363
LS A+ +G G DD + R R PSHR + GL PA++ + FG
Sbjct: 56 LSDAAATAGAGADDDPTLLA-RIRAAADASPSHRRLFVHGLPPHADAPALAAAFSRFG 112
>06_01_1170 - 10002650-10004122
Length = 490
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 196 STASVHSGGGGDDALIRASLRRRPHKAVP 282
+ A+VH GGGG A+ L H A+P
Sbjct: 57 TAAAVHPGGGGGGAISALILPFPSHPAIP 85
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 199 TASVHSGGGGDDALIRASLRRRPHKAVP 282
+AS GGGGD A R L RR K VP
Sbjct: 681 SASSSGGGGGDGAAAR-ELERRLRKNVP 707
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 403 RHQLHKRYVEYQQSRT*EWTSIRLVILYHLLNPDNYSDEKVE 278
+H +H RY++ ++SR + L LYHL S K++
Sbjct: 645 QHMVHLRYLDIKESREFTFLPTSLFGLYHLQALSLQSRHKID 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.307 0.125 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,660
Number of Sequences: 37544
Number of extensions: 249448
Number of successful extensions: 594
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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