Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P17
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    33   0.13 
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    33   0.13 
U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   3.8  
U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       27   6.6  
Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 196 STASVHSGGGGDDALIRAS--LRRRPHKAVPPSHRNSYQGLEGDTGLPAVST 345
           S +SVHSGG   DAL R    +RRR  +A   S     QG+    G+ A  T
Sbjct: 413 SISSVHSGGARQDALARRKEFIRRRKQQADQQSADKVIQGMSKIAGVGAALT 464


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 196 STASVHSGGGGDDALIRAS--LRRRPHKAVPPSHRNSYQGLEGDTGLPAVST 345
           S +SVHSGG   DAL R    +RRR  +A   S     QG+    G+ A  T
Sbjct: 413 SISSVHSGGARQDALARRKEFIRRRKQQADQQSADKVIQGMSKIAGVGAALT 464


>U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical
           protein EEED8.11 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/77 (25%), Positives = 28/77 (36%)
 Frame = +1

Query: 232 DALIRASLRRRPHKAVPPSHRNSYQGLEGDTGLPAVSTSTPMFGTAGTRRTVYVADDETN 411
           +A+IR       H+  P S+   +   +  T  P  STSTP   T+    T       T 
Sbjct: 21  EAIIRPGYGSGGHRP-PSSYHGGHHNDDDCTTKPPKSTSTPSTSTSTPTTTTTTTTTTTT 79

Query: 412 VNLNTKPQSTPIQENPT 462
               T   +T     PT
Sbjct: 80  TPTTTTTTTTTTTPEPT 96


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 280 PPSHRNSYQGLEGDTG 327
           PPSHR SYQG  G  G
Sbjct: 394 PPSHRGSYQGSSGRGG 409


>U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical
           protein F39B3.3 protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 250 SLRRRPH-KAVPPSHRNSYQGLEGDTGLPAVSTSTPMFGTAGTR 378
           S+RR    + VP  + +S + L   TG P  STST + G A TR
Sbjct: 69  SVRRSSRIRRVPDRYGSSVEHLSTSTGTPRGSTSTQL-GQASTR 111


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 136  SIP-SLDTGRLTNESNFVRRLSTASVHSGGGGDDALIRASLRRRPHKAVP 282
            S+P  L  GR+ ++  F +R        G   D   + ++L RRP KAVP
Sbjct: 1188 SLPRGLKMGRIEDQDEFWKRTQDPDAIEGTASDANNVFSNLMRRP-KAVP 1236


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 136  SIP-SLDTGRLTNESNFVRRLSTASVHSGGGGDDALIRASLRRRPHKAVP 282
            S+P  L  GR+ ++  F +R        G   D   + ++L RRP KAVP
Sbjct: 1188 SLPRGLKMGRIEDQDEFWKRTQDPDAIEGTASDANNVFSNLMRRP-KAVP 1236


>Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.4 protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 155 VSKLGMDVPSSEFSDFLNVXXXXXXXXXXXXLCRGDSTLT 36
           +++LGM +P+ EFSD  +V               GD  LT
Sbjct: 266 MTRLGMGLPNQEFSDISSVYNGQEYTLVNFENLHGDFCLT 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.307    0.125    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,945
Number of Sequences: 27780
Number of extensions: 201157
Number of successful extensions: 386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)