Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P17
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.23 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.40 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 214 SGGGGDDALIRASLRRRPHKAVPPSHRNSYQGLEGDTGLPAVSTSTPMFGTAG 372
           S GG +DA +    R  P+ ++ PS  + +  L    G  A  +      TAG
Sbjct: 258 SSGGNEDANLLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAG 310


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +1

Query: 202 ASVHSGGGGDDALIRASLRRRPHKAVPPSHRN----SYQGLEGDTGLP 333
           A+  S   GDD L RASL + P     P  R     S  G+E  T  P
Sbjct: 542 ANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKP 589


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 204 CCREPPNKITF 172
           CC EP + ITF
Sbjct: 231 CCTEPYSDITF 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.125    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,973
Number of Sequences: 438
Number of extensions: 2359
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.1 bits)