Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P16
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    26   2.8  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   3.7  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   6.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   8.5  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   8.5  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   8.5  

>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = -3

Query: 345 DVNICKR*KKETDRVTIGWHSWQCLGSQNR 256
           ++N+ ++ +KE D+V + + S Q +GSQ++
Sbjct: 254 NLNVSEKERKERDKVFLPYFSAQMVGSQHK 283


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 288 HSWQCLGSQNRELTSI 241
           H W+CLGS+  EL  I
Sbjct: 12  HRWRCLGSEGNELIYI 27


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 41  Q*TIIYDQNTVAHSGIPSEARGKFVVW 121
           Q T +Y  NT+ HS +P  + G  + W
Sbjct: 17  QRTELYVYNTLTHSKVPFVSNGSNLTW 43


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 242  ILVSSRFCEPRHCQLCHPIV 301
            +L ++  CEP  C LCH +V
Sbjct: 1040 VLDNAIICEPLLCTLCHLLV 1059


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 178 KSFSDLLKSNYNVTIFTWAPYNKFAT 101
           +S  D +  NYN  +  W  YN  A+
Sbjct: 283 ESLFDTIPDNYNPNVTAWLSYNSDAS 308


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 251 SSRFCEPRHCQLCHPIVTLSVSFFYLLH 334
           S + C P    +  P  T+   FFYL H
Sbjct: 555 SPKACTPTLASIISPAATIHQYFFYLQH 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,068
Number of Sequences: 5004
Number of extensions: 34648
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)