Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P16
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    29   2.8  
02_05_0625 + 30453521-30453890,30454215-30454352,30454458-304547...    28   3.7  
10_08_0908 - 21476700-21476945,21477638-21477935,21478078-214783...    27   6.5  

>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 164 IAKAFKYLVV-SNFNSYILVNFVKNVRILVSSRFCEPRHCQLCHPIVTLSVSFFYL 328
           +A A  Y+    +  +Y+L++F  +++I V ++FC  R+ QL     T + S+  L
Sbjct: 118 VAAACLYIACRQSKKAYLLIDFSDHLQISVFAKFCYLRNIQLSKSSSTPAFSYIVL 173


>02_05_0625 +
           30453521-30453890,30454215-30454352,30454458-30454727,
           30454844-30454983,30455067-30455213,30455319-30456008
          Length = 584

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 280 PAMPPYSYSIGLFFLPFTYVYIS 348
           P M PY Y   +F L F YV +S
Sbjct: 180 PKMKPYEYGFRVFLLTFCYVTVS 202


>10_08_0908 -
           21476700-21476945,21477638-21477935,21478078-21478325,
           21479319-21479573
          Length = 348

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 164 IAKAFKYLVVSNFNSYILVNFVKNVRILVSSRFCEPRHCQLCHPI-VTLSVSFFY 325
           I K  K+  V+  N  ++VN    + IL + +F    H  + HP    +S + FY
Sbjct: 242 INKDGKWFSVNALNGALIVNIGDTLEILSNGKFRSVEHRAVVHPSRERISAALFY 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,842,052
Number of Sequences: 37544
Number of extensions: 202176
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)