Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P16
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine rece...    27   5.8  
AF016420-6|AAB65311.3|  530|Caenorhabditis elegans Udp-glucurono...    27   5.8  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    27   7.7  
U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    27   7.7  

>U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein20 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 188 VVSNFNSYILVNFVKNVRILVSSRFCEPRHCQL 286
           V SNFN+YI++     + I++ + F E   C L
Sbjct: 114 VFSNFNTYIMICMAYAIAIVMCTTFYELLECYL 146


>AF016420-6|AAB65311.3|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein7 protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 AFKYLVVSNFNSYILVNFVKNV 238
           AFKYL++S   SY  V F+ N+
Sbjct: 15  AFKYLIISPIYSYSHVKFMSNI 36


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 309 RSLFFTFYICLHLVSPTSTVFVMFSSYSCTVKYKLA 416
           R+ FF + + LH +S +    ++  SY C + YK A
Sbjct: 87  RTCFFGYSLMLHFLSHSLWSLLLSFSYRCYILYKPA 122


>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 330 YICLHLVSPTSTVFVMFSSYSCTVKYKLARRKKCSNFESSHSV*CIQIEYLNFPIV 497
           +IC    S   TV +++SS S  + +      +  + +S   + CIQ++Y +FP++
Sbjct: 22  HICFDACS--KTVKIVYSS-SVPLSHTTLECTRILSKQSEDRIYCIQVQYPDFPLI 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,568,732
Number of Sequences: 27780
Number of extensions: 194797
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)