Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P14
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   0.89 
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   2.1  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    26   3.6  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    25   4.7  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    25   6.3  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -1

Query: 380  TSQNINIYEEFVTFTSFTLQVDCNISVSNTSVTDITVSVSFQIVYYNCLDQFAPNSLDGK 201
            T  NI I E F        QV C +       T + V  +  ++Y+N   +    +L GK
Sbjct: 2902 TLPNIEIQEAFYKLRE---QVLCYLQNPRDLKTGLEVVTNTNLMYFNSRQKSEFVTLKGK 2958

Query: 200  FVTSLHKG 177
            F+  L++G
Sbjct: 2959 FLEKLNRG 2966


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 263 SFQIVYYNCLDQFAPNSLDGKFVTSL 186
           S + V Y CLD   P+S+ G F  SL
Sbjct: 100 SIENVSYKCLDHSPPDSVPGDFSISL 125


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 308 ISVSNTSVTDITVSVSFQI-VYYNCLDQFAPNSLDGKF 198
           + +S+ S +D+  S  F+  V  +CLD  +   +DG F
Sbjct: 247 LQLSSLSESDLETSAIFEKGVLLSCLDSLSERKVDGSF 284


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 162 EKYAVPLMKRSDKFTVKGVGRELIKAVVINDLKGDGNS 275
           EK+   L++       K  GR L+ AVVI++ K +G +
Sbjct: 337 EKFRTALIECKSPIVQKVRGRGLLNAVVIDESKTNGRT 374


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -1

Query: 314 CNISVSNTSVTDITVSVSFQIVYYNCLDQFAPNS-----LDGKF 198
           C   V    ++DI   +   +   NCLD +AP+S     +DG F
Sbjct: 145 CYTHVLPAGLSDIVGKMPVMLFCPNCLDLYAPSSSRYKNIDGSF 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,990
Number of Sequences: 5004
Number of extensions: 33856
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)