Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P14
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    33   0.17 
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213...    29   2.7  
01_01_0198 + 1718374-1718875,1719591-1719604                           28   3.6  
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531...    27   6.3  
05_07_0056 + 27382708-27383871,27384450-27384818                       27   8.3  
02_04_0209 - 20942021-20942181,20942354-20942420,20942651-209427...    27   8.3  

>07_01_0464 -
           3504264-3504475,3504842-3505031,3505310-3505408,
           3505561-3505653,3505926-3506891,3507267-3507485,
           3508038-3508247,3508371-3508630,3508956-3510737,
           3510796-3511009
          Length = 1414

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = +3

Query: 99  ARGNLVIGNIIGGHLIYHEIHEKY----AVPLMKRSDKFTVKGVGRELIKAV--VINDLK 260
           +R  +V+GN   G     E++++Y    A+P +    K  VKGVG     ++  VI  L+
Sbjct: 294 SRTKVVVGNTSSGVYRDAELYDRYIDLRAIPELNSVSK-DVKGVGIGAAMSISQVIEILR 352

Query: 261 GDGNSY 278
           G+GNSY
Sbjct: 353 GEGNSY 358


>03_06_0559 +
           34719296-34719410,34719519-34719577,34719664-34721322,
           34722421-34722562,34722645-34723330
          Length = 886

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 111 LVIGNIIGGHLIYHEIHEKYAVPLMKRSDKFTVKGVGRELIKAVVINDLKGDGNSYISDG 290
           LV  N     ++ H+++ K   P  +RS+  ++ G  R++  A   ++    GN  +   
Sbjct: 351 LVQNNRKQNAMVKHKVNSKPPTPNRQRSNTHSINGTMRKVGTAGTPSENNTQGNRNVELR 410

Query: 291 GIGHRNVTINLQSK 332
             GH N   N  +K
Sbjct: 411 STGHANRRQNSTAK 424


>01_01_0198 + 1718374-1718875,1719591-1719604
          Length = 171

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 83  GNADGSARESRNRQHHW-RPSYLPRNTREIRRTP 181
           G ADG   + R R+  W RP++  R  R  RR P
Sbjct: 78  GTADGGRPDWRERRTRWRRPAWRERRGRRWRRRP 111


>07_03_0263 -
           15951011-15951818,15952009-15952526,15952949-15953197,
           15953270-15953857
          Length = 720

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 252 DLKGDGNSYISDGGIGHRNVTINLQSKRGEGYKFLID 362
           +L+ D   + S GG   R  T N     GEGY+ ++D
Sbjct: 181 ELEDDVEEFASSGGPPRRVGTYNGAQMSGEGYQAIVD 217


>05_07_0056 + 27382708-27383871,27384450-27384818
          Length = 510

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 263 SFQIVYYNCLDQFAPNSLDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYY 114
           SF +   N LD   P   D    T LH+ YG F+V+    + A +++ Y+
Sbjct: 209 SFIVKLLNLLDSEDPRERDC-LKTILHRIYGKFMVHRPFIRKAVSNIFYH 257


>02_04_0209 -
           20942021-20942181,20942354-20942420,20942651-20942743,
           20943026-20943119,20943690-20943762,20943865-20943973,
           20944564-20944663,20945389-20945487,20945571-20945641,
           20946067-20946144,20946317-20946403,20946538-20946636
          Length = 376

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 26/82 (31%), Positives = 37/82 (45%)
 Frame = -1

Query: 389 NFITSQNINIYEEFVTFTSFTLQVDCNISVSNTSVTDITVSVSFQIVYYNCLDQFAPNSL 210
           NF+ S+ I    E   FT+  +QV  +I      + D+T   SF IV      + AP  L
Sbjct: 14  NFVESEQIM---ESKGFTASYVQVRGSIPFLWVQIVDLTYKPSFDIV----RQEEAPRIL 66

Query: 209 DGKFVTSLHKGYGVFLVYFVVD 144
           +  F   L K YG  L   +V+
Sbjct: 67  EQHF-HDLQKKYGAVLAVDLVN 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,762,502
Number of Sequences: 37544
Number of extensions: 201192
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)