Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P14
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-7|CAB07486.1|  402|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF106575-8|AAC78169.1|  395|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z47812-2|CAA87789.2|  396|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U40707-1|AAB39924.1|  278|Caenorhabditis elegans apurinic/apyrim...    27   9.9  

>Z92972-7|CAB07486.1|  402|Caenorhabditis elegans Hypothetical
           protein T19C9.8 protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 227 FAPNSLDGKFVTSLHKGYGVFLVY-FVVDKMAANDVAYY 114
           +AP S D K+V S  +G G   VY  V+ K  AN VA Y
Sbjct: 190 YAPGSFDTKYVLSSFEGDGKLDVYNGVITKNQANRVASY 228


>AL023816-3|CAA19432.1|  296|Caenorhabditis elegans Hypothetical
           protein T05G11.4 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = -1

Query: 287 VTDITVSVSFQIVYYNCLDQFAPNSLDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEI 108
           VT +T+S       +  +  F P  ++   +  ++  +G+ LV+       A+   YY +
Sbjct: 201 VTFMTISFLISTTPHGLMYVFGPFLVEIPVILMIYSRFGLILVFLTTVNGVAHFSVYYFM 260

Query: 107 PARYRQ 90
            +RYR+
Sbjct: 261 SSRYRK 266


>AF106575-8|AAC78169.1|  395|Caenorhabditis elegans Hypothetical
           protein K04F1.10 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -1

Query: 386 FITSQNINIYEEFVTFTSFTLQVDCNISVSNTSVTDITVSVSFQIVYYNCLDQFAPNSLD 207
           FITS+++  + +        +Q+D N  VS   +T    ++    V Y  L+ +  N   
Sbjct: 31  FITSESLKQFPKECETVFGNIQIDENCDVSEKQLTSAFKNMK---VLYGNLNVYRTNFTS 87

Query: 206 GKFVTSLHK 180
           GKF+  L +
Sbjct: 88  GKFLEGLEE 96


>Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical
           protein F16H6.9 protein.
          Length = 676

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 300 HRNVTINLQSKRGEGYKFLIDVYV 371
           HRNV  N+ S + +G  F++D+ V
Sbjct: 495 HRNVDFNITSVKDKGEHFVVDITV 518


>Z47812-2|CAA87789.2|  396|Caenorhabditis elegans Hypothetical
           protein T05H10.2 protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 216 VGRELIKAVVINDLKGDGNS------YISDGGIGHRNVTINLQSKRGEGYKFLID 362
           VG   +KA+ IND KGD  S      +I  G IG     + +   R +G   +++
Sbjct: 323 VGWNYLKAIHINDSKGDVGSKLDRHEHIGQGKIGKAAFELLMNDNRLDGIPMILE 377


>U40707-1|AAB39924.1|  278|Caenorhabditis elegans
           apurinic/apyrimidinic endonuclease protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +3

Query: 216 VGRELIKAVVINDLKGDGNS------YISDGGIGHRNVTINLQSKRGEGYKFLID 362
           VG   +KA+ IND KGD  S      +I  G IG     + +   R +G   +++
Sbjct: 205 VGWNYLKAIHINDSKGDVGSKLDRHEHIGQGKIGKAAFELLMNDNRLDGIPMILE 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,729
Number of Sequences: 27780
Number of extensions: 189366
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)