Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P13
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 30 0.23
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.71
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 28 0.93
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.2
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 27 2.8
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 26 3.8
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 5.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 5.0
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 5.0
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.6
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 25 6.6
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.7
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 8.7
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 472 ISTGDDEKKDKIDVDNCDDEENSLQSRPL 558
++TG D K+D+ CD ENS S PL
Sbjct: 25 VATGIDSMPSKVDITPCDLLENSKSSAPL 53
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.7 bits (61), Expect = 0.71
Identities = 17/78 (21%), Positives = 41/78 (52%)
Frame = +1
Query: 88 LNNLEDFVWDNYANHILRSALKCLSGINLLPGEKPKVNLFKKLVDDNKGIPPHTTEMVYR 267
L++L + + D+ ++ ++ + K + IN LPG + ++ + D +GI H + ++
Sbjct: 71 LSSLLEGLSDSKSSTLVVADPKLGNAINKLPGLEFEIISDSSVQDLYRGIREHLSSLISG 130
Query: 268 IVPDEFDEIVKDFAHRLS 321
+ P + + + +H LS
Sbjct: 131 LAPSDLNAMSLGLSHSLS 148
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 0.93
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 262 YRIVPDEFDEIVKDFAHRLSAW 327
Y +VP + DEI DF + AW
Sbjct: 505 YTMVPPDLDEICVDFVQKFGAW 526
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 2.2
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 361 TSALLQVLLYAVRNVDXXXXXXXXXXXXXESFAPDDWISTGDDEKKDKIDVDNCDDEENS 540
+ A++ L +RN D +F D I+ DE DV DDEE+
Sbjct: 390 SEAVVSPLQSNIRNSDIAEFDEFDIDDADFTFNTTDPIN---DESGASSDVVVIDDEEDD 446
Query: 541 LQSRPLPPVFESESA 585
+++RPL ++ A
Sbjct: 447 IENRPLNQALKASKA 461
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 83 YLHSFIVNSWHFFKCSSLYVLLLF 12
+ H F + +H+ C SL LLLF
Sbjct: 62 FFHHFTIACYHYSLCLSLVALLLF 85
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/68 (20%), Positives = 27/68 (39%)
Frame = +1
Query: 124 ANHILRSALKCLSGINLLPGEKPKVNLFKKLVDDNKGIPPHTTEMVYRIVPDEFDEIVKD 303
A+ + +C G+ EK LF+ + + + + T + P E EI++
Sbjct: 72 ASSVFHYGFECFEGMKAFRDEKGVPRLFRPIKNAERMLSTGTRISLPSFDPAELAEIIRK 131
Query: 304 FAHRLSAW 327
F + W
Sbjct: 132 FVAHENRW 139
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 148 LKCLSG--INLLPGEKPKVNLFKKLVDDNKGIPPHTTEMVY 264
+K L+G I L KV+ K+ V++ +GIPP ++Y
Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIY 45
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 457 APDDWISTGDDEKKDKIDVDNCDDEENSLQSR 552
+PDDW S+ + ++D NC NS Q +
Sbjct: 447 SPDDWASSWYSTVRSQLDSYNCQFVVNSNQPK 478
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 148 LKCLSGINLLPGEKPKVNLFKKLVDDNKGIPPHTTEM 258
L+ LSG+ + KP L LV+ +P H + M
Sbjct: 365 LQILSGLTGIRFNKPLFKLLGSLVEHRSSVPNHLSHM 401
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 448 ESFAPDDWISTGD 486
ESF PD W TGD
Sbjct: 506 ESFTPDGWFRTGD 518
>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 159
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 463 DDWISTGDDEKKDKIDVDNCDDEENSLQSRPLPPVFESESAVRLLE 600
D++ + DEK I +DN DE + ++ P + + + +E
Sbjct: 53 DEYFVSESDEKFHPICIDNIPDEFEEIDAKTFDPHQKYKKVIHAIE 98
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 271 VPDEFDEIVKDFAHRLSAWPQFKDLPYQNITSALLQVL 384
VP EF+EI + A SAW D ++TS LL L
Sbjct: 134 VPTEFEEIPSEAATIASAWAGGTD--GMDVTSTLLNQL 169
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 208 KKLVDDNKGIPPHTTEMVYRIVPDEFDEIVKDFAHRL-SAWPQFKD 342
K L+ DN I + +V E EI+ + HR+ + +PQ D
Sbjct: 184 KTLLSDNSPIVVPAALFTFEVVCPEKLEIIHPYYHRICTLFPQMND 229
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 22 NTYSEEHLKKCHEFTIKLCKYA 87
+TY LKK E+ KLC++A
Sbjct: 236 STYEVSELKKFWEYADKLCQFA 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,814
Number of Sequences: 5004
Number of extensions: 49069
Number of successful extensions: 156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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