Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P13
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510...    29   2.9  
11_06_0669 - 26084906-26087350                                         28   6.8  
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973...    27   8.9  
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    27   8.9  

>07_01_0678 -
           5103836-5104613,5104697-5104888,5104994-5105036,
           5105712-5105835,5105924-5106016,5106754-5106931,
           5107032-5107138,5108098-5108179,5108277-5108314,
           5108409-5108495,5109025-5109135,5109282-5109773
          Length = 774

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 448 ESFAPDDWISTGDDEKKDK--IDVDNCDDEENSLQSRPLPP 564
           E   P++     DD K D+  + V+N +++E   Q  PLPP
Sbjct: 685 EDDGPEEQKDNSDDNKMDEDHVMVENKEEQEEQPQPPPLPP 725


>11_06_0669 - 26084906-26087350
          Length = 814

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 269 IL*TISVVCGGIPLLSSTSFLNKFTLGFSPGNKLIPLRHFKALR 138
           I+ T  + C  I +L+S   L  F +   PG +L  LRH   LR
Sbjct: 559 IIATADLNCPNIGMLTSLQTLPLFPVKKEPGYELQQLRHLNKLR 602


>06_03_0593 +
           22596372-22596384,22596856-22597037,22597119-22597344,
           22597429-22597855,22598075-22598429,22598511-22599089
          Length = 593

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 466 DWISTGDDEKKDKIDVDN 519
           DW S  DDE+ D +D DN
Sbjct: 247 DWNSDSDDEESDDLDEDN 264


>03_03_0266 - 16014740-16015045,16015566-16015601,16015623-16015643,
            16016331-16016591,16017504-16018985,16019834-16019989,
            16020154-16020277,16020399-16020615,16020877-16021774,
            16022947-16023291,16023371-16023565,16023751-16024453,
            16024866-16025467
          Length = 1781

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 529  EENSLQSRPLPPVFESESAVRLLEAALF 612
            ++N L++ P  P+F    A RLLE A++
Sbjct: 1627 DQNLLEAMPTSPIFVGNKAKRLLERAVW 1654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,127,334
Number of Sequences: 37544
Number of extensions: 290424
Number of successful extensions: 914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)