Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P13
         (616 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X65644-1|CAA46596.1| 2500|Homo sapiens MBP-2 (MHC Binding Protei...    30   7.5  
M60119-1|AAB88218.1| 1833|Homo sapiens HIV-EP2/Schnurri-2 protein.     30   7.5  
DQ231041-1|ABB16331.1| 2446|Homo sapiens c-myc intron-binding pr...    30   7.5  
AL023584-1|CAA19042.1| 2446|Homo sapiens human immunodeficiency ...    30   7.5  
AF153836-1|AAF81365.1| 2446|Homo sapiens human immunodeficiency ...    30   7.5  

>X65644-1|CAA46596.1| 2500|Homo sapiens MBP-2 (MHC Binding Protein-2)
            protein.
          Length = 2500

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 475  STGDDEKKDKIDVDNCDDEENSLQSRP 555
            ST  +  KD++D+ +C DEE  L S P
Sbjct: 2060 STDSEPDKDRLDIPSCMDEECMLPSEP 2086


>M60119-1|AAB88218.1| 1833|Homo sapiens HIV-EP2/Schnurri-2 protein.
          Length = 1833

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 475  STGDDEKKDKIDVDNCDDEENSLQSRP 555
            ST  +  KD++D+ +C DEE  L S P
Sbjct: 1393 STDSEPDKDRLDIPSCMDEECMLPSEP 1419


>DQ231041-1|ABB16331.1| 2446|Homo sapiens c-myc intron-binding protein
            1 protein.
          Length = 2446

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 475  STGDDEKKDKIDVDNCDDEENSLQSRP 555
            ST  +  KD++D+ +C DEE  L S P
Sbjct: 2006 STDSEPDKDRLDIPSCMDEECMLPSEP 2032


>AL023584-1|CAA19042.1| 2446|Homo sapiens human immunodeficiency virus
            type I enhancer binding protein 2 protein.
          Length = 2446

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 475  STGDDEKKDKIDVDNCDDEENSLQSRP 555
            ST  +  KD++D+ +C DEE  L S P
Sbjct: 2006 STDSEPDKDRLDIPSCMDEECMLPSEP 2032


>AF153836-1|AAF81365.1| 2446|Homo sapiens human immunodeficiency virus
            type I enhancer-binding protein 2 protein.
          Length = 2446

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 475  STGDDEKKDKIDVDNCDDEENSLQSRP 555
            ST  +  KD++D+ +C DEE  L S P
Sbjct: 2006 STDSEPDKDRLDIPSCMDEECMLPSEP 2032


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.317    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,129,914
Number of Sequences: 237096
Number of extensions: 1728463
Number of successful extensions: 3411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3409
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)