Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P13
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99283-6|CAB16539.2|  556|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF016664-6|AAB66063.1|  155|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AC006675-7|AAK84555.2|  409|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z99283-6|CAB16539.2|  556|Caenorhabditis elegans Hypothetical
           protein Y70C5C.5 protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 43  LKKCHEFTIKLCKYALNNLEDFVWD 117
           LK CH +T  + KY   N+ + +WD
Sbjct: 465 LKTCHHWTGGITKYKSYNVPEIIWD 489


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 466 DWISTGDDEKKDKIDVDNCDDEENSLQSRPLPPVFESESAV 588
           D +  G D+  D  D  NCD  E    + P+PP   +  +V
Sbjct: 532 DRLCDGTDDCGDGSDETNCDSNEADQPAAPIPPPVPAPDSV 572


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 466 DWISTGDDEKKDKIDVDNCDDEENSLQSRPLPPVFESESAV 588
           D +  G D+  D  D  NCD  E    + P+PP   +  +V
Sbjct: 532 DRLCDGTDDCGDGSDETNCDSNEADQPAAPIPPPVPAPDSV 572


>AF016664-6|AAB66063.1|  155|Caenorhabditis elegans Hypothetical
           protein D2062.5 protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 487 DEKKDKIDVDNCDDEENSLQSRPL 558
           DEK+DK D D C D+ +SL  +PL
Sbjct: 115 DEKRDKKDTDIC-DQFDSLHKKPL 137


>AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical
           protein Y49F6A.1 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 166 INLLPGEKPKVNLFKKLVDDNKGIPPHTTEMVYRIVPDEFDEIV 297
           + L+ GE     +   +  DNK  P H +  V +++ D+F+EIV
Sbjct: 216 VRLVDGENGSTEIIMTI--DNKLAPFHKSTSVLKMICDKFEEIV 257


>Z82286-8|CAB05308.2|  487|Caenorhabditis elegans Hypothetical
           protein W02A2.5 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 455 SLPMTGSQPVMMRRKTRSTLIIVMMKR-TAYKVDLFHLCLNQSLLLD 592
           S P+T  QPV + RK   TL  V+      + V+++ LCL  SL+L+
Sbjct: 110 SYPVTNVQPVFVARKKTETLGSVLWNAFKPFSVEVW-LCLLASLVLN 155


>Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical
           protein M05B5.3 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 463 DDWISTGDDEKKDKIDVDNCDDEENS 540
           +DW+S  DD   ++ID+D   DE +S
Sbjct: 161 EDWLSGFDDRDGERIDLDEETDEVDS 186


>AC006675-7|AAK84555.2|  409|Caenorhabditis elegans Hypothetical
           protein M02H5.5 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 37  EHLKK-CHEFTIKLCKYALNNLEDFVWDNYANH 132
           EH+KK C  FT +  +   + L D + D Y NH
Sbjct: 323 EHIKKSCDRFTQETVEQLQDTLSDHLHDYYINH 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,421
Number of Sequences: 27780
Number of extensions: 274399
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)