Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P13
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   1.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   1.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 294 CQRFCPSVI 320
           CQRFCP+V+
Sbjct: 50  CQRFCPNVV 58


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 294 CQRFCPSVI 320
           CQRFCP+V+
Sbjct: 50  CQRFCPNVV 58


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 300 RFCPSVICLASV*GFTISEYNFRITTGSVI 389
           R  P+  C+A +    I    +R+T G+V+
Sbjct: 390 RLIPTTTCIARILDEPIELSGYRLTAGTVV 419


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 184 EKPKVNLFKKLVDDNKGIPPHTTEMVYRIVPDEFDEIVKDFAH 312
           EKP V   +K +DD + I  H          D+F+ + +D+ +
Sbjct: 505 EKPLVREIEKTIDDARFIAQHAKN------KDKFESVEEDWKY 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,541
Number of Sequences: 438
Number of extensions: 3241
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)