Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P12
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 133 1e-32
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 132 2e-32
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 113 1e-26
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 106 1e-24
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 101 6e-23
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 90 2e-19
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 64 7e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 59 2e-10
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 57 1e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 54 1e-08
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 50 1e-07
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 48 8e-07
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 45 4e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 44 1e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 43 2e-05
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 42 3e-05
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 33 0.014
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 32 0.033
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 2.9
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 2.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 3.8
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 3.8
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 5.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 24 8.7
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 133 bits (321), Expect = 1e-32
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = +1
Query: 178 IRKKLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDT 357
+R+KLVIVGDGACGKTCLLIVFSK FPE + FENYVAD+EVDG+ VELALWDT
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYV---PTVFENYVADVEVDGRHVELALWDT 61
Query: 358 AGQEDYDRLLTLSYPDTDVILMCF 429
AGQEDYDRL LSYPD+ VIL+CF
Sbjct: 62 AGQEDYDRLRPLSYPDSHVILICF 85
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 132 bits (319), Expect = 2e-32
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +1
Query: 178 IRKKLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDT 357
+R+KLVIVGDGACGKTCLLIVFSK FPE + FENYVAD+EVDG+ +ELALWDT
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYV---PTVFENYVADVEVDGRHIELALWDT 61
Query: 358 AGQEDYDRLLTLSYPDTDVILMCF 429
AGQEDYDRL LSYPD+ V+L+CF
Sbjct: 62 AGQEDYDRLRPLSYPDSHVVLICF 85
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 113 bits (271), Expect = 1e-26
Identities = 56/97 (57%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Frame = +1
Query: 145 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEV- 321
S+ SG + KKLV+VGDG CGKTCLLIVFS FPE + FENY+ DI
Sbjct: 2 SAFKKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYV---PTVFENYITDITYG 58
Query: 322 -DGKQVELALWDTAGQEDYDRLLTLSYPDTDVILMCF 429
+ K +ELALWDTAGQE+YDRL LSYP+++VIL+CF
Sbjct: 59 PNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCF 95
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 106 bits (255), Expect = 1e-24
Identities = 52/94 (55%), Positives = 66/94 (70%)
Frame = +1
Query: 148 SSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDG 327
SS I +K+VI+GDGA GKT LL VF+K FP+ E + FENY+ DI VDG
Sbjct: 2 SSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQ---VYEPTIFENYIHDIFVDG 58
Query: 328 KQVELALWDTAGQEDYDRLLTLSYPDTDVILMCF 429
+EL+LWDTAGQE+YD+L +LSY DT VI++CF
Sbjct: 59 NSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICF 92
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 101 bits (241), Expect = 6e-23
Identities = 49/84 (58%), Positives = 60/84 (71%)
Frame = +1
Query: 178 IRKKLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDT 357
IR+KLV+VGDGACGKT LL VF+ FP + FENYV+D VDGK V+LALWDT
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYV---PTVFENYVSDCRVDGKSVQLALWDT 63
Query: 358 AGQEDYDRLLTLSYPDTDVILMCF 429
AGQE+Y+RL +SY +IL+ F
Sbjct: 64 AGQEEYERLRPMSYAKAHIILVGF 87
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/81 (51%), Positives = 54/81 (66%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
K V+VGDGA GKTCLLI ++ ++FP + F+NY + + + L L+DTAGQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYV---PTVFDNYAVTVMIGDEPYTLGLFDTAGQ 61
Query: 367 EDYDRLLTLSYPDTDVILMCF 429
EDYDRL LSYP TDV L+CF
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCF 82
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 64.5 bits (150), Expect = 7e-12
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
KL+++GD GK+CLL+ FS+D F S T + + IE+DGK+++L +WDTAGQ
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
Query: 367 EDYDRLLTLSYPDTDVILMCF 429
E + + T Y IL+ +
Sbjct: 69 ERFRTITTAYYRGAMGILLLY 89
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 59.3 bits (137), Expect = 2e-10
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
KL+++GD GK+CLL+ F+ D + ES T + + E++GK V+L +WDTAGQ
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTFELEGKTVKLQIWDTAGQ 67
Query: 367 EDYDRLLTLSY 399
E + R +T SY
Sbjct: 68 ERF-RTITSSY 77
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 57.2 bits (132), Expect = 1e-09
Identities = 30/95 (31%), Positives = 52/95 (54%)
Frame = +1
Query: 145 SSSASSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVD 324
+S+ + + I +KLV++GD A GK+ L++ F KDQF + + F I+ +
Sbjct: 2 ASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPID-E 60
Query: 325 GKQVELALWDTAGQEDYDRLLTLSYPDTDVILMCF 429
V+L +WDTAGQE Y L + Y + + ++ +
Sbjct: 61 NTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVY 95
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 53.6 bits (123), Expect = 1e-08
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
K+VI+GD GKTCL+ F +F S + T + D+ VD K V L LWDTAGQ
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKF--SREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQ 67
Query: 367 EDYDRLLTLSYPDTDVILMCF 429
E + L Y D ++ +
Sbjct: 68 ERFQSLGMAFYRGADCCVIVY 88
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 50.4 bits (115), Expect = 1e-07
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
K V++GD GK+ LL+ F++++F + + T E +I +D K+++ +WDTAGQ
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEF--NIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69
Query: 367 EDYDRLLTLSY 399
E Y R +T +Y
Sbjct: 70 ERY-RAITSAY 79
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 47.6 bits (108), Expect = 8e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 175 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALW 351
++RK KLV +G+ + GKT L+ F DQF T + T + + ++ + V L LW
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDN--TYQATIGIDFLSKTMYLEDRTVRLQLW 65
Query: 352 DTAGQEDYDRLLTLSYPDTDVILMCF 429
DTAGQE + L+ D+ V ++ +
Sbjct: 66 DTAGQERFRSLIPSYIRDSSVAIIVY 91
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.2 bits (102), Expect = 4e-06
Identities = 24/66 (36%), Positives = 37/66 (56%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
KLV+VGDG GK+ L I + F + + + ++Y E+DG+ L + DTAGQ
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEY---DPTIEDSYRKKCEIDGEGALLDVLDTAGQ 66
Query: 367 EDYDRL 384
E+Y +
Sbjct: 67 EEYSAM 72
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 43.6 bits (98), Expect = 1e-05
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
K++I+G+ GKT ++ + +F + + T + ++ VD K V L LWDTAGQ
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDY--KATIGADFLTKEVLVDDKVVTLQLWDTAGQ 67
Query: 367 EDYDRLLTLSYPDTDVILMCF 429
E + L Y D ++ +
Sbjct: 68 ERFQSLGVAFYRGADCCVLVY 88
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDG--KQVELALWDTA 360
K+V+ G GK+CLL F K+Q+ + + F + + + + K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 361 GQEDY 375
GQE +
Sbjct: 71 GQEKF 75
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
K+ ++GD + GKT L++ + + F E T +T I + ++ ++WD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEEST--QTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
Query: 367 EDYDRLLTLSYPDTDVILMCF 429
++ +L + D IL F
Sbjct: 70 REFVNMLPMVCNDAVAILFMF 90
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 33.5 bits (73), Expect = 0.014
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 169 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELA 345
MA I+ +++ ++G + GK+ L + + ++ F ES + F +I+ G++
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSK---NIKYKGQEFATE 57
Query: 346 LWDTAGQEDYDRL 384
+ DTAGQ++Y L
Sbjct: 58 IIDTAGQDEYSIL 70
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 32.3 bits (70), Expect = 0.033
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 187 KLVIVGDGACGKTCLLIVFSKDQFPESCTCRETSCFENYVADIEVDGKQVELALWDTAGQ 366
KLV+VGDG GKT + +F + T E + + ++ +WDTAGQ
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIA--TLGVEVHPLHFHTNFGEICFNVWDTAGQ 68
Query: 367 E 369
E
Sbjct: 69 E 69
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 169 MAAIRKK--LVIVGDGACGKTCLL 234
+ I KK ++VGD A GKTC+L
Sbjct: 1863 ITCINKKWPCILVGDTATGKTCIL 1886
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 385 AACRSPLXRPYPTALVPPV 329
A+ R L R YPT LVPP+
Sbjct: 108 ASLRVQLSRLYPTCLVPPL 126
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 257 N*SLLNTIRRHVLPHAPSPTITNFLRIAAIGPELAEEEQ 141
N L N + +H + P T+ FLR PE +EQ
Sbjct: 355 NDDLQNLLSKHRISRIPMSTVNAFLRAEDSIPESFSDEQ 393
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 236 IRRHVLPHAPSPTITNFLRIAAIG 165
I H+LP+ TITNF R+ G
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPG 211
>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.0 bits (52), Expect = 5.0
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -1
Query: 82 RFWLISAKYWLIDT 41
+ WL S+++WL+DT
Sbjct: 106 KLWLWSSRFWLLDT 119
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 86 LKILANFCEILAYRH 42
+KILANFCE + H
Sbjct: 572 IKILANFCEPTIHEH 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,706
Number of Sequences: 5004
Number of extensions: 35845
Number of successful extensions: 109
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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