Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P11
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 1.7
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 27 1.7
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 2.2
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 26 3.9
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 3.9
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 5.2
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p... 25 6.8
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 9.0
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 9.0
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 25 9.0
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 25 9.0
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 25 9.0
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 9.0
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 309 TAGATTHGRRPVTRNSVSPTMQSSI 383
T HGR P+ N+ SPT ++I
Sbjct: 514 TTSGREHGRTPIRSNTFSPTFDTTI 538
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 299 QIPNGWGYNPWSQTGHKKLRQPDNAEFD 382
QIP W Y W+QT K+ +P+ D
Sbjct: 474 QIPCDWVYIQWAQTYIKQSSEPEEVVLD 501
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 89 REYCMDLVSMETQEENNLIFKLIQQNDV 172
+E +DL+ M+ QEEN+ I + +ND+
Sbjct: 321 KEKILDLLEMKQQEENDRISHIEYENDL 348
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 171 YLTYGLLGAYAISKVANHVEISNQRISLVGSGPPIAKRFHLQTRFPTAGATTHGRR 338
YLT L A ++A + I ++ +S S PI+ ++ TR A T RR
Sbjct: 134 YLTPNALQRQAKERLAQTLGIRDEEVSYEASRMPISHKWTNATRHRQALLRTQARR 189
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 174 LTYG-LLGAYAISKVANHVEISNQRISLVGSGPPIA 278
+T+G L+ AISKV HVE + Q+ +V +G +A
Sbjct: 340 VTHGPLISEKAISKVKQHVEDAVQKGGVVVTGGKVA 375
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 244 EYPWLVLVRQSRKDFTYKP 300
E PW +L R+S D Y P
Sbjct: 30 ELPWRILARRSGADLCYSP 48
>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 159
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 455 HRATLYRHYRHCLVYSSMTQMF 390
HR+ +Y HY+H L S F
Sbjct: 93 HRSLVYNHYKHLLEASDAINSF 114
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 110 RGPCSIHGICYVRL 69
R PC IH IC+V L
Sbjct: 36 RAPCEIHEICWVIL 49
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 394 CLVDIELCIVGLTEFLVTGLRPWVVAPAVGNL 299
C + + L G F+ ++ W +APAVG+L
Sbjct: 273 CTLHVNLGQAGYV-FIEANIKKWRLAPAVGSL 303
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 190 RSPYVRYVILLDEFEDQVIFLLSLHGDEVHAV 95
R+ +Y L+EFED+++ L L D V V
Sbjct: 172 RNARAKYEESLEEFEDRMVQLKELEPDRVENV 203
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 170 VPYIWTSGRLCDFKGCESRRDLEPKNILGWFWSANREKISPTNQIP 307
V Y + G+ D +G ++E +L W N + ++P N P
Sbjct: 70 VKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRP 115
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 308 NGW---GYNPWSQTGHKKLRQPDNAEFDINQTSESCL 409
+GW G+N WS+ HKK I + S+ +
Sbjct: 25 SGWIMSGHNKWSKIKHKKSANDQARSLQIGKLSQGII 61
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 116 METQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCESRRDLE 238
M T+E+ N +N++P+++ S R+ + E DLE
Sbjct: 213 MLTEEQRNYWSSYFNENNIPFLFFSARMA-AEANERGEDLE 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,209
Number of Sequences: 5004
Number of extensions: 50986
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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