Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P11
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461     29   1.7  
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128     29   3.0  
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364...    28   5.2  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    28   5.2  
06_03_1065 - 27316270-27317032,27317062-27317189                       27   6.9  
07_01_0435 - 3311257-3311280,3311281-3311516,3313288-3313465           27   9.1  
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566...    27   9.1  
03_06_0196 + 32260357-32260785                                         27   9.1  

>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
          Length = 874

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 359 DGVSCDRSATMGCSPSRWESGL*VKSFRDWRTRTN-QGYSLVRDLYVI 219
           +GV+C+  + +GC PS  +  L V  +RD    +   G+S +RD   I
Sbjct: 735 EGVNCEDLSIIGCLPSLLQLSLRVPGYRDSLIISGCYGFSCLRDFCFI 782


>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
          Length = 1226

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 374 EFDINQTSESCLSILNNVYNDGIAWHDVACYHEKPIVCEDSD 499
           EFD N + E    IL + Y +G+ +H  +C+    I  EDSD
Sbjct: 676 EFDNNPSLEMIKKILASSY-EGLTYHLKSCFLYMSIFPEDSD 716


>11_06_0460 +
           23836034-23836083,23836175-23836318,23836397-23836480,
           23836695-23836838,23836928-23836978,23837070-23837150,
           23837366-23837509,23837599-23837649,23837738-23838056,
           23839994-23840062,23840378-23840698,23841218-23841583,
           23842241-23842304,23842569-23842690
          Length = 669

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 81  TYAVNTAWTSSPWRLKRKIT*SSNSSNRMTYLTYGLLGAYAISKVANHVEI 233
           TY ++ A T S  RL+ KIT  +N  NR+ +  Y     Y  ++  NH+ I
Sbjct: 608 TYNIDCATTYSSERLQFKITIYNNGLNRLKHPKY----MYTANEPFNHIII 654


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 332  SQTGHKKLRQPDNAEFDINQTSESCLSILNNVYNDGIAWHDVACYHEKP 478
            + T + +L   DN  F I  ++ S LS       +G  WH +A  H KP
Sbjct: 1140 ANTLYAELYLHDNGVFTIATSNSSSLSFPGIEMEEG-KWHHLAVVHSKP 1187


>06_03_1065 - 27316270-27317032,27317062-27317189
          Length = 296

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 180 YGLLGAYAISKVANHVEISNQRISLVGSGPPIAKRFHLQTRFP---TAGATTHGRR 338
           + + G  A   +A H  +S++R+++ G    +A    LQ R P    AGA    RR
Sbjct: 17  FNVNGYSATKAMAKHEHVSSKRLTVAGPRCALALLGRLQARLPRHRRAGAARRRRR 72


>07_01_0435 - 3311257-3311280,3311281-3311516,3313288-3313465
          Length = 145

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 481 DRLLV-VTSDIVPRYTVIIDIV*YTQA*LRCLVDIELCIVGLTEFLVTGLRPWVVAPAVG 305
           DR+L+ +  + +  YT  ID V  ++      V +   I    + L+T +RPWV  P   
Sbjct: 76  DRILLELEHEFLEVYTTKIDKVNQSR------VQLRQAIAEAEQSLLTSVRPWVKPPMHV 129

Query: 304 NLVC 293
            LVC
Sbjct: 130 RLVC 133


>05_04_0376 -
           20754386-20755392,20755683-20756320,20756433-20756627,
           20757730-20757795,20757942-20758007,20758402-20758445
          Length = 671

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 456 TSCHAIPSL*TLFSILKHDSDVWLIS 379
           T C  IP+L    +++KH+ + WL S
Sbjct: 285 TDCFPIPNLFPCKNLVKHEGNAWLYS 310


>03_06_0196 + 32260357-32260785
          Length = 142

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
 Frame = +2

Query: 362 PDNAEFDINQTSESCLSILNNVYNDGIAWHDVACYHEKPIVCEDS--DELLNYV 517
           PD+  FD ++  + C   L++  ++ +   DV C+  + I+C+++  DE+++++
Sbjct: 87  PDDEIFDDDEEID-CEEELDDDDDESLDADDVECFDAEDIICKENPDDEIMSHL 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,682
Number of Sequences: 37544
Number of extensions: 340461
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)