Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P10
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718...    29   2.9  

>09_02_0317 +
           7186148-7186243,7186406-7186572,7186766-7186878,
           7187059-7187133,7187215-7187328,7187545-7187612,
           7187690-7187773,7187966-7188019,7188104-7188184,
           7188279-7188372,7188501-7188574,7188656-7188766,
           7188976-7189032,7189119-7189223,7189584-7189687,
           7190021-7190186,7190279-7190416
          Length = 566

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 406 TVDHIHTLRQVTKALRFNCDLGCTAVSLAG 317
           TVD IHT  QV  A+   CDL    + + G
Sbjct: 159 TVDQIHTTEQVNAAMSTCCDLDLDGLVIIG 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,365,451
Number of Sequences: 37544
Number of extensions: 195243
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)