Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P10
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    44   8e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    44   8e-05
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    44   8e-05
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    29   1.5  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
 Frame = -3

Query: 490 FRVFT----NRLACRLDDFKPHE*AGF*KSFSTVDHIHTLRQVTKALR 359
           ++VFT    NR+   LD+ +P E AGF +SFST+DHIH+L+++ +  R
Sbjct: 462 YKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGR 509



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 372 QKHFDSIVTWAVLQSL*RGQVDYRYINALKDLYVNAT 262
           +K FD++   A+ +SL     D  YI+ LK+ Y N T
Sbjct: 523 KKAFDTVEHQAIWKSLDEQGADGAYIDLLKECYKNCT 559


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
 Frame = -3

Query: 490 FRVFT----NRLACRLDDFKPHE*AGF*KSFSTVDHIHTLRQVTKALR 359
           ++VFT    NR+   LD+ +P E AGF +SFST+DHIH+L+++ +  R
Sbjct: 633 YKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGR 680



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 372 QKHFDSIVTWAVLQSL*RGQVDYRYINALKDLYVNAT 262
           +K FDS+   A+ +SL     D  YI+ LK+ Y N T
Sbjct: 694 KKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCT 730


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
 Frame = -3

Query: 490 FRVFT----NRLACRLDDFKPHE*AGF*KSFSTVDHIHTLRQVTKALR 359
           ++VFT    NR+   LD+ +P E AGF +SFST+DHIH+L+++ +  R
Sbjct: 372 YKVFTKCLLNRMRRSLDEAQPVEQAGFRRSFSTIDHIHSLQRLLEVGR 419



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 372 QKHFDSIVTWAVLQSL*RGQVDYRYINALKDLYVNAT 262
           +K FDS+   A+ +SL     D  YI+ LK+ Y N T
Sbjct: 433 KKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCT 469


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 372 QKHFDSIVTWAVLQSL*RGQVDYRYINALKDLYVNAT 262
           +K FDS+   A+ +SL     D  YI+ LK+ Y N T
Sbjct: 45  KKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCT 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,358,360
Number of Sequences: 27780
Number of extensions: 193396
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)