Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P10
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.20 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.20 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.35 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 178 IVDIRDNHIQSIERRSLLVIGLLYSD*YGGVNIQILQRIDVSI 306
           +VD   NH++   ++ L V+G +       VN+Q+  ++D+ +
Sbjct: 342 VVDSYGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLLV 384


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 178 IVDIRDNHIQSIERRSLLVIGLLYSD*YGGVNIQILQRIDVSI 306
           +VD   NH++   ++ L V+G +       VN+Q+  ++D+ +
Sbjct: 342 VVDSYGNHVKLYTKQGLNVLGNIVQGNGDSVNVQLYGQLDLLV 384


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 14  DKKLLISRNPLPSSDNLNIFYNINHFAYSNHFITKYK 124
           + K++ + N L  S+N N  YN N+  Y+N++ T YK
Sbjct: 78  EPKIISNNNSL--SNNYN--YNNNYNNYNNNYNTNYK 110


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
 Frame = +3

Query: 219 TFTAG-HRSPVFRLIWW 266
           T  AG HR  V  L+WW
Sbjct: 57  TSKAGIHRKKVLLLVWW 73


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 246 VFRLIWWR*HTNPSTH*CIYNL 311
           VF +++W  + N + + CIY L
Sbjct: 43  VFSVLFWLGYCNSAINPCIYAL 64


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 246 VFRLIWWR*HTNPSTH*CIYNL 311
           VF +++W  + N + + CIY L
Sbjct: 491 VFSVLFWLGYCNSAINPCIYAL 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,343
Number of Sequences: 438
Number of extensions: 2354
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)