Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P09
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 305 1e-83
Z78415-3|CAB01674.1| 530|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z77660-4|CAB01172.1| 501|Caenorhabditis elegans Hypothetical pr... 28 5.9
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 28 5.9
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 5.9
AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical ... 27 7.9
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 305 bits (750), Expect = 1e-83
Identities = 133/198 (67%), Positives = 169/198 (85%)
Frame = +3
Query: 9 FKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQ 188
FKRAE+YV+EYR +++ +RL R+A +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ
Sbjct: 47 FKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQ 106
Query: 189 LFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPIT 368
+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT
Sbjct: 107 ILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPIT 166
Query: 369 SNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDG 548
N+++E+ L K NIIC+EDL HEI TVG FK A+NFLWPFKLNNPTGGW KKT H+V+G
Sbjct: 167 DNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEG 226
Query: 549 GDFGNREDQVNELLRRMV 602
GDFGNREDQ+N LLR+MV
Sbjct: 227 GDFGNREDQINNLLRKMV 244
>Z78415-3|CAB01674.1| 530|Caenorhabditis elegans Hypothetical
protein C17G1.3a protein.
Length = 530
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 396 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTI 533
+KQ II ++ + EIF+ EKF SN +W +++NP W I
Sbjct: 71 AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRI 113
>Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical
protein T07C12.8 protein.
Length = 965
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2
Query: 559 PKSPPST**IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLS 392
P SP + IVFL + S + HR +Y +F PT + S++R ++ + LS
Sbjct: 100 PLSPTNILSIVFLSPYSLNYLSFSAHRSTFSYCSF-PTGHRSFVRPASANILLPLS 154
>Z77660-4|CAB01172.1| 501|Caenorhabditis elegans Hypothetical
protein F38H4.4 protein.
Length = 501
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = -1
Query: 605 LDHSPEELVDLVLAVTEVAAVDVVNRL------LAPTSSRVVQFEWPQEVTCVLELLTDS 444
LDHS L D +D R L TS+ Q Q V CVL LLTDS
Sbjct: 237 LDHSKVHLSDSSYIHASYLELDTQKRAILTQLPLPHTSADFWQMIIEQRVKCVLLLLTDS 296
Query: 443 KY 438
+Y
Sbjct: 297 EY 298
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = -1
Query: 590 EELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 411
++ + +V TE+ VD + L T S ++F E+ + T+ ++ + L A
Sbjct: 915 DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972
Query: 410 DVLFAKSLLDE*VGGDRDTLPVQFGETAF 324
VLF S+ E +GG + ET F
Sbjct: 973 TVLFKVSIFREKMGGQDPPIITIQSETNF 1001
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = -1
Query: 590 EELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 411
++ + +V TE+ VD + L T S ++F E+ + T+ ++ + L A
Sbjct: 915 DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972
Query: 410 DVLFAKSLLDE*VGGDRDTLPVQFGETAF 324
VLF S+ E +GG + ET F
Sbjct: 973 TVLFKVSIFREKMGGQDPPIITIQSETNF 1001
>AF106591-1|AAD47131.2| 710|Caenorhabditis elegans Hypothetical
protein T01A4.3 protein.
Length = 710
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 396 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPT 509
S+Q+ C +H + + ++F + LW +++NPT
Sbjct: 361 SRQSTKCDPRSLHTLMGLAQRFGFDYLILWAARIDNPT 398
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,518
Number of Sequences: 27780
Number of extensions: 262911
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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