Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P08
         (536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093048-1|AAH93048.1|  398|Homo sapiens Bernardinelli-Seip cong...    77   5e-14
BC041640-1|AAH41640.1|  398|Homo sapiens BSCL2 protein protein.        77   5e-14
BC012140-1|AAH12140.1|  398|Homo sapiens BSCL2 protein protein.        77   5e-14
BC009866-1|AAH09866.2|  400|Homo sapiens Bernardinelli-Seip cong...    77   5e-14
BC004911-1|AAH04911.1|  398|Homo sapiens BSCL2 protein protein.        77   5e-14
AK223606-1|BAD97326.1|  398|Homo sapiens seipin variant protein.       77   5e-14
AK075317-1|BAC11543.1|  398|Homo sapiens protein ( Homo sapiens ...    77   5e-14
AK027524-1|BAB55175.1|  287|Homo sapiens protein ( Homo sapiens ...    77   5e-14

>BC093048-1|AAH93048.1|  398|Homo sapiens Bernardinelli-Seip
           congenital lipodystrophy 2 (seipin) protein.
          Length = 398

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


>BC041640-1|AAH41640.1|  398|Homo sapiens BSCL2 protein protein.
          Length = 398

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


>BC012140-1|AAH12140.1|  398|Homo sapiens BSCL2 protein protein.
          Length = 398

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


>BC009866-1|AAH09866.2|  400|Homo sapiens Bernardinelli-Seip
           congenital lipodystrophy 2 (seipin) protein.
          Length = 400

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


>BC004911-1|AAH04911.1|  398|Homo sapiens BSCL2 protein protein.
          Length = 398

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


>AK223606-1|BAD97326.1|  398|Homo sapiens seipin variant protein.
          Length = 398

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


>AK075317-1|BAC11543.1|  398|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90836 fis, clone Y79AA1002058, moderately
           similar to Mus musculus Gng3lg mRNA. ).
          Length = 398

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


>AK027524-1|BAB55175.1|  287|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14618 fis, clone NT2RP1001449, highly similar to
           Mus musculus Gng3lg mRNA. ).
          Length = 287

 Score = 76.6 bits (180), Expect = 5e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
 Frame = +2

Query: 302 YVVFYHTYMPNVTHVRSTHFQFKP-CED-TMGICSFPYAYVQLTR--TSQILMPAQAYRI 469
           Y  FY++YMP V+H+   HF ++  C+  T  +CSFP A V LT+    ++LM  Q YR+
Sbjct: 49  YGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRV 108

Query: 470 KLVLDMPESQVNKDLGMSLV 529
            L L++PES VN+DLGM LV
Sbjct: 109 TLELELPESPVNQDLGMFLV 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,217,124
Number of Sequences: 237096
Number of extensions: 1244075
Number of successful extensions: 1880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1864
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)