Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P07
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   169   2e-43
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   157   8e-40
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   4.5  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   5.9  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   5.9  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   5.9  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    25   5.9  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.8  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  169 bits (410), Expect = 2e-43
 Identities = 78/122 (63%), Positives = 102/122 (83%)
 Frame = +2

Query: 113 MPIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIESEYHGK 292
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD  ++++ GK
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 293 GVLTAIKNINDIIAPELLSKNIEVTEQREIDQLMLKLDGTENKSKLGANAILGVSLAVAK 472
           GVL A+ N+N+IIAP ++  N++VT+Q+  D+ +LKLDGTENKSKLGANAILGVS+A+ +
Sbjct: 61  GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120

Query: 473 AG 478
           AG
Sbjct: 121 AG 122


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  157 bits (381), Expect = 8e-40
 Identities = 74/119 (62%), Positives = 98/119 (82%)
 Frame = +2

Query: 119 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIESEYHGKGV 298
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRDN ++++ GKGV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 299 LTAIKNINDIIAPELLSKNIEVTEQREIDQLMLKLDGTENKSKLGANAILGVSLAVAKA 475
             A+ N+N+II P L+  +I++T+QR ID+ M+KLDGT +KSKLGAN+I+GVS+AVA+A
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARA 122


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 391 KLINLSLFSHFNILRKQFRCNDVINVFDSCQNTFSMV 281
           KL+  +   HF  +R  F   D I  FD C N  ++V
Sbjct: 285 KLLVKAAKQHFGDIRLYFVTPDDIYTFDHCNNWIAIV 321


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 198 PNSVTKSTSTVGLPRESKI*RALIDLI 118
           PNS T     VGL R+ KI R + DLI
Sbjct: 219 PNSTTYDYLMVGLSRDGKI-REIYDLI 244


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 472 FGNSQRNS*DGICSKLRFVFSPIQFEHKLINLSLFSH 362
           F N+Q    D   +++R ++SP + E K  +  +++H
Sbjct: 832 FDNNQLREIDSYWAQMRLLYSPFESEIKGTDSDVYNH 868


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 239 HQLKLQKVLQHGTNPILSPSLLRQ*GCHENQRS 141
           H L++  +L     P  S  LL Q G  +NQRS
Sbjct: 478 HSLRISGILLQPIMPTKSTELLDQLGIPKNQRS 510


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 323 DIIAPELLSKNIE--VTEQREIDQLMLKLDGTENKSKLG 433
           D++A +++  N    +  Q+E    +L  DGT N++KLG
Sbjct: 33  DVLARKVVEPNTPCLIKIQKEFGNEVLHEDGTLNRAKLG 71


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 146 FDSRGNPTVEVDLVTELGLFRAAVPSGASTG 238
           F     PTV VDL     L RA  P   STG
Sbjct: 528 FSRYNQPTVSVDLRNSSILRRAQEPVNGSTG 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,792
Number of Sequences: 5004
Number of extensions: 38938
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)