Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P07
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 156 1e-38
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 141 2e-34
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 139 9e-34
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 139 9e-34
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 77 1e-14
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 31 0.64
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 31 0.64
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 29 1.5
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 29 2.6
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 29 2.6
05_04_0100 + 18001824-18001831,18001953-18002151 29 2.6
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 28 3.4
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 27 6.0
04_04_1520 - 34138485-34138691 27 7.9
04_04_0592 + 26477974-26479311 27 7.9
02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742... 27 7.9
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537... 27 7.9
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 156 bits (378), Expect = 1e-38
Identities = 78/121 (64%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Frame = +2
Query: 119 IKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIESEYHGKG 295
++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GKG
Sbjct: 51 VRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGKG 110
Query: 296 VLTAIKNINDIIAPELLSKNIEVTEQREIDQLMLKLDGTENKSKLGANAILGVSLAVAKA 475
VL A++NIN++IAP+L+ ++V Q ++D +ML +DGT NKSKLGANAILGVSL+V +A
Sbjct: 111 VLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCRA 168
Query: 476 G 478
G
Sbjct: 169 G 169
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 141 bits (342), Expect = 2e-34
Identities = 82/127 (64%), Positives = 95/127 (74%), Gaps = 7/127 (5%)
Frame = +2
Query: 119 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIESEYHGKG 295
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 296 VLTAIKNINDIIAPELLSKNIEVTEQREIDQLML-KLDGTEN-----KSKLGANAILGVS 457
VL A+ N+N II P L+ K + TEQ ID M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VLKAVDNVNSIIGPALIGK--DPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 458 LAVAKAG 478
LA+ KAG
Sbjct: 122 LALCKAG 128
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 139 bits (337), Expect = 9e-34
Identities = 80/127 (62%), Positives = 94/127 (74%), Gaps = 7/127 (5%)
Frame = +2
Query: 119 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIESEYHGKG 295
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 296 VLTAIKNINDIIAPELLSKNIEVTEQREIDQLML-KLDGTEN-----KSKLGANAILGVS 457
V A+ N+N +IAP L+ K + T Q E+D M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VSKAVDNVNSVIAPALIGK--DPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 458 LAVAKAG 478
LA+ KAG
Sbjct: 122 LAICKAG 128
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 139 bits (337), Expect = 9e-34
Identities = 81/127 (63%), Positives = 94/127 (74%), Gaps = 7/127 (5%)
Frame = +2
Query: 119 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIESEYHGKG 295
I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDYLGKG 63
Query: 296 VLTAIKNINDIIAPELLSKNIEVTEQREIDQLML-KLDGTEN-----KSKLGANAILGVS 457
VL A+ N+N II P L+ K + TEQ +ID M+ +LDGT N K KLGANAIL VS
Sbjct: 64 VLKAVSNVNTIIGPALIGK--DPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAILAVS 121
Query: 458 LAVAKAG 478
LAV KAG
Sbjct: 122 LAVCKAG 128
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/120 (35%), Positives = 70/120 (58%)
Frame = +2
Query: 119 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIESEYHGKGV 298
I S++ARQI D RG P VEV L T + RA+ + + A +RD + + + V
Sbjct: 47 ITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARAV 106
Query: 299 LTAIKNINDIIAPELLSKNIEVTEQREIDQLMLKLDGTENKSKLGANAILGVSLAVAKAG 478
A++ IND ++ L+ ++ +Q +IDQ ++ LD +K+++G N++L VS+A KAG
Sbjct: 107 ADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKAG 164
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 197 GLFRAAVPSGASTGVHEALELRDNIESEYHGKGVLTAIKNINDIIAPELLSKN 355
GL +A + SGA + A+E D+ YHG V +++N +IA + S++
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADDEASES 1176
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -3
Query: 442 GICSKLRFVFSPIQFEHKLI----NLSLFSH 362
G C KL+ V PI F HKL NL+LF H
Sbjct: 535 GYCQKLQCVKLPISFSHKLTAARRNLALFQH 565
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 212 AVPSGASTGVHEALELRDNIESEY-HGKGVLTAIKNINDIIAPELLSKNI 358
AVP STG + +E+ E HG T KN+ND A + L+ I
Sbjct: 346 AVPDNQSTGQNVPIEVDSEEEGNARHGGNQQTCQKNVNDTAAQKYLNSVI 395
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 257 IPKPHGHQLKLQKVLQHGTNPILS 186
+ KPHG L LQ +++ G NP S
Sbjct: 103 VSKPHGRNLFLQSLVEEGQNPSTS 126
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 300 RTPFPWYSLSMLSLNSKASWTPVEAPEGTAAR 205
R+P P S S S +++S TP AP GT+AR
Sbjct: 76 RSPTPSSSPSTASAAARSSRTPSAAPGGTSAR 107
>05_04_0100 + 18001824-18001831,18001953-18002151
Length = 68
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 257 IPKPHGHQLKLQKVLQHGTNPILS 186
+ KPHG L LQ +++ G NP S
Sbjct: 11 VSKPHGRNLFLQSLVEEGQNPSTS 34
>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 245 EALELRDNIE---SEYHGKGVLTAIKNINDIIAPELLSKNIEVTEQREIDQLMLKLDGTE 415
E + +DN+ + + G + ++D I PEL N+E TEQR ID + + G
Sbjct: 1145 ETISSKDNLHHGLNSSNNSGGAGETELLDDFIEPEL--DNVENTEQRVIDDINITESGDM 1202
Query: 416 NKS 424
S
Sbjct: 1203 ESS 1205
>08_02_1034 + 23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 264 SLNSKASWTPVEAPEGTAARNKPNSVTKSTSTV 166
+L+S S +PV P G A++ K N +TKS V
Sbjct: 1173 TLDSSVSSSPVSMPSGPASK-KENVITKSVEKV 1204
>04_04_1520 - 34138485-34138691
Length = 68
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -1
Query: 333 AMMSLMFLIAVRTPFPWYSLSMLSLNSK---ASWTPVEAPEGTAARNKPNSVTKSTS 172
A++ ++ L+A P+ S +S S+ AS P E+P G A P + STS
Sbjct: 4 ALVLVVILLAAIAVAPFAEASTVSAASRVLLASEAPAESPAGPAPAPGPTEESSSTS 60
>04_04_0592 + 26477974-26479311
Length = 445
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -1
Query: 318 MFLIAVRTPFPWYSLSMLSLNSKASWTPVEAPEGTAARNKPNSVTKSTSTV 166
+ L+++ PF LS++ L S +++ + P ++PN+ T +T+TV
Sbjct: 13 LLLLSLSLPFLLLLLSLVFLLSHTTFSLLLCPLLPRPTSRPNATTMATTTV 63
>02_05_1171 +
34672997-34673122,34673500-34673595,34674126-34674229,
34674303-34674502,34674643-34674765,34674910-34674998,
34675579-34675642,34675906-34676049,34676173-34676270,
34676479-34676724,34676826-34676909,34677011-34677022
Length = 461
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 342 CFLRILK*LNRERLINLCSNWMGL 413
CF R+++ ++ R + +C W+GL
Sbjct: 238 CFERLMRRVHLRRSLGICHGWLGL 261
>02_01_0721 -
5373449-5373603,5373912-5373981,5374473-5374620,
5374755-5374870,5374955-5375033,5375163-5375233,
5376201-5376344,5376439-5376592,5376906-5376941,
5377145-5377226,5377315-5377408,5377993-5378062,
5378177-5378274,5378745-5378827,5379335-5379428,
5379533-5380036
Length = 665
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 173 EVDLVTELGLFRAAVPSGAST--GVHEALELRDNIESEYHGKGVLTAIKNINDIIAPELL 346
+V V E GLFR+ +P T G+ E+ N ++HG A + +
Sbjct: 139 DVHRVVESGLFRSCMPVAVDTRDGIRLVFEVEPN--QDFHGLVCEGANMLPSKFLEDAFH 196
Query: 347 SKNIEVTEQREIDQLMLKLDG 409
++ ++ R +DQ++ ++G
Sbjct: 197 DRHGKIINIRHLDQVIKSVNG 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,016
Number of Sequences: 37544
Number of extensions: 237741
Number of successful extensions: 596
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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