Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P06
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    23   4.2  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    23   7.4  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    22   9.7  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    22   9.7  

>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 58  QIEHARRKYNNNL 96
           QIEH  RKYN N+
Sbjct: 147 QIEHLNRKYNVNV 159


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 8   ASCRERDINEMIVSKKYKLSTQDG 79
           A   E  I+EMI ++KYK   ++G
Sbjct: 270 ACMMEEWIHEMIETRKYKSENKEG 293


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 64  EHARRKYNNNLRKFVTIMSIYEII*FKLSVETIRTDTY 177
           EHA  KY ++L+  + +    + I  K SVE +  D +
Sbjct: 527 EHALTKYESSLKAELEVYKQIKEIYGKHSVEVLTEDKH 564


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -1

Query: 124 RLT*LLQIFSDYYYISVLRAQFVLFTNNHFI 32
           R + L + F D+Y  ++ + + ++ T++HF+
Sbjct: 140 RFSRLEEAFRDFYIKNLEKTEDLIRTDSHFV 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,521
Number of Sequences: 5004
Number of extensions: 10641
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)