Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P06
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272...    25   6.4  
01_06_0892 + 32763195-32764149,32764489-32764575,32764665-327648...    25   8.5  

>06_01_0379 -
           2723365-2723490,2724558-2724647,2724813-2725046,
           2725174-2725470
          Length = 248

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 192 FFINTICIRPYRLNGQFKLN 133
           FF++ IC+ P+   G+ KLN
Sbjct: 195 FFMSMICLNPFTCIGRSKLN 214


>01_06_0892 +
           32763195-32764149,32764489-32764575,32764665-32764829,
           32764904-32766219
          Length = 840

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 2   HEASCRERDINEMIVSKKYKLSTQD 76
           H+ +C E D+NE   ++K+  S+ +
Sbjct: 227 HKTNCMEEDLNEDATAEKFAASSTE 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,057,947
Number of Sequences: 37544
Number of extensions: 51038
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)