Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P06
         (196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z81533-7|CAB04330.1|  290|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 121 LT*LLQIFSDYYYISVLRAQFVLFTNNHFIDIT 23
           LT   ++F  Y  I   RA+F+ F     IDIT
Sbjct: 189 LTSRRRVFGSYALIGTQRAEFIQFRQIKHIDIT 221


>Z81533-7|CAB04330.1|  290|Caenorhabditis elegans Hypothetical
          protein F36G9.11 protein.
          Length = 290

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 69 VLNLYFLLTIISLISRSRHE 10
          +L  +FLLTI+SL +  RH+
Sbjct: 4  ILIFFFLLTIVSLAASHRHK 23


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 102 FSQIIIIFPSCVLNLYFLLTIISL 31
           F+ +I+IFP  V +L+FL+  ++L
Sbjct: 64  FTFLILIFPYTVQDLHFLIVYLAL 87


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 107 TNFLRLLLYFRLACS-ICTFY 48
           + FLR +LYF L CS +  FY
Sbjct: 21  SRFLRSVLYFNLFCSAVAVFY 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,981,276
Number of Sequences: 27780
Number of extensions: 58741
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)