Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P06
         (196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   1.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   7.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   7.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   7.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   7.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   7.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    18   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 45  TIISLISRSRHEASC 1
           TIIS +  +RH A+C
Sbjct: 304 TIISSVFTTRHNATC 318


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein
          protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 45 TIISLISRSRHEASC 1
          TIIS +  +RH A+C
Sbjct: 10 TIISSVFTTRHNATC 24


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 108 YKFSQIIIIFPSCVLNLYFLLTIIS 34
           + + Q+ ++    +L ++FL TI+S
Sbjct: 419 FDWKQVALVSDRALLCVFFLTTIVS 443


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  RERDINEMIVSKKYKLSTQDGN 82
           R RDIN++ ++++      DGN
Sbjct: 182 RLRDINDIGLNRRDSDDGSDGN 203


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 104 NFLRLLLYFRLACSICTFY*QSF 36
           NF RL+++FR    I     Q+F
Sbjct: 185 NFSRLVVFFRFERQIGHHLIQTF 207


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 113 LCQSTKLFNLNCP 151
           LC + +LF   CP
Sbjct: 193 LCMAGRLFGYLCP 205


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 98  LRLLLYFRLACSICTFY 48
           LRL     LACS  T Y
Sbjct: 149 LRLSFCVVLACSTATVY 165


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 88 YYISVLRAQFVLFTNNHFIDITLSARG 8
          Y  S+  A   L  +  F+D+TL+  G
Sbjct: 14 YQSSITSAFENLRDDEDFVDVTLACDG 40


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 61  IEHARRKYNNNLRKFVTIM 117
           +E A R   NNL  F+T +
Sbjct: 156 LERAFRCLGNNLTAFLTTL 174


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 11/51 (21%), Positives = 20/51 (39%)
 Frame = -2

Query: 165 PYRLNGQFKLNNFVD*HNCYKFSQIIIIFPSCVLNLYFLLTIISLISRSRH 13
           P R +     N++VD      F+  I++   C +       I    + S+H
Sbjct: 799 PTREDNLLVCNSYVDASYMIAFAYPIMLIVVCTVYAVLTRKIPEAFNESKH 849


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 110 VTNFLRLLLYFRLACSICT 54
           +TN+L L++   +AC   T
Sbjct: 1   MTNWLLLIVCLSIACQDVT 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,748
Number of Sequences: 438
Number of extensions: 811
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2541420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)