Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P05
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 195 2e-51
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 109 2e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 108 3e-25
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 103 9e-24
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 29 0.32
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.74
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 2.3
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 2.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 2.3
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 3.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 6.9
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 6.9
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.9
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.9
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 24 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 195 bits (476), Expect = 2e-51
Identities = 82/108 (75%), Positives = 95/108 (87%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 259
MREIVHIQAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 260 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE 403
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTE
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTE 108
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 109 bits (262), Expect = 2e-25
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 253
MREI+ I GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 254 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 400
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYT 109
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 108 bits (260), Expect = 3e-25
Identities = 45/106 (42%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +2
Query: 83 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 262
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 263 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGH 394
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 103 bits (248), Expect = 9e-24
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Frame = +2
Query: 80 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 241
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 242 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 400
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYT 113
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 29.1 bits (62), Expect = 0.32
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 166 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLLNTNIFCSARTTH 14
+++I D+L S + LSG ++ + H D+++L ++L I TH
Sbjct: 273 SLIISDELNHTSIRFGARLSGANIRVYKHNDMTDLERVLREVISQGQPRTH 323
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.74
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 90 SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITM 236
S +SR + + LSS S P+ TAS+ +LT+++ T S +T+
Sbjct: 427 STSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVTV 475
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 1.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 119 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 220
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 1.3
Identities = 23/97 (23%), Positives = 38/97 (39%)
Frame = +3
Query: 90 SCTSRPDNAETRLELSSGRSSPMSTASTPPVLTTATQTCSWSASMFITMRXXXXXXXXXX 269
S S P ++ + + S+ SS S +S L+T+++ S +S T+
Sbjct: 466 SSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSS---TLLSGSSAIPSTS 522
Query: 270 XXXXXXXXXXXXXXRDPSDRSSAPTTSFSDSPAPVTT 380
S SS PT+S SD + +TT
Sbjct: 523 SSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITT 559
Score = 26.6 bits (56), Expect = 1.7
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Frame = +3
Query: 48 LSNLFSSDISK*GKSCTSRPDNAETRLELSSG-RSSPMSTASTPPVLTTATQTCSWSASM 224
LS SS S + TS P + + + SS SSP T ST ++ +++ S S+S+
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP--TPSTSSLMISSSSIISGSSSI 649
Query: 225 FITMRXXXXXXXXXXXXXXXXXXXXXXXXRDPSDR--SSAPTTSFSDSPAPVTTGLRDT 395
+ S SS+P S S SP P ++ L T
Sbjct: 650 LSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVST 708
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 2.3
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 175 GVDAVLIGDDLPELSSNLVSALSGLDVHDFPHFDISELNKLLNTNIFCSARTT 17
G+D +IG+D E S L S L+ LD P++ I N NT + +A T
Sbjct: 176 GIDIRIIGNDAGEKLSILSSTLARLD-RPAPNYGIDNYND-FNTFYYQAASGT 226
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 2.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 166 AVLIGDDLPELSSNLVSALSGLDVHDFPHFDISEL 62
A++ G L L+S L + + + D PHF +S +
Sbjct: 44 AIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHV 78
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 314 GPFGQIFRPDNFVFGQSGAG-NNWA 385
GP+G +F P F+F +G NW+
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWS 181
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 372 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 277
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 6.9
Identities = 18/78 (23%), Positives = 28/78 (35%)
Frame = -3
Query: 283 EVDEDGAGHVLASGGLIVINIDXXXXXXXXXXVSTGGVDAVLIGDDLPELSSNLVSALSG 104
+VDE +G ++ IN++ S G + + SN S L
Sbjct: 911 DVDESNSGSIVFPKSKTSINLNNINSASASIMGSRFGAADIFMSKRPSTKGSNRPSILLS 970
Query: 103 LDVHDFPHFDISELNKLL 50
HDF I ++K L
Sbjct: 971 KPSHDFHVVRIISMSKYL 988
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 181 TGGVDAVLIGDDLPE-LSSNLVSALSGLDVHDFPH 80
+G + + + DL E L L+SA GL+ H F H
Sbjct: 31 SGKPEFINLSPDLEENLDEKLMSAFPGLEPHVFQH 65
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 312 RDPSDRSSAPTTSFSDSPAPVTTGLRDT 395
+DPSD S+PT S +P+ T L+ T
Sbjct: 19 QDPSDAQSSPTFVPSANPSLTTPWLQTT 46
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 6.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 417 LAQHTSV*CPLAQLLPAPD-CPKTKLSGRKI 328
LAQ+TS+ P LP+PD P T S ++
Sbjct: 265 LAQYTSIPLPCPLQLPSPDQKPMTSFSSEQM 295
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +2
Query: 296 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEV 406
M ++R + P N++FG++ G G+ T++
Sbjct: 109 MSNIRKAQVKILKNPGNYIFGRTEYGKRTYSGNSTKI 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,719
Number of Sequences: 5004
Number of extensions: 29754
Number of successful extensions: 129
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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