Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P04
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   1.4  
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    25   4.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   7.6  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = +1

Query: 142 TDHIMNVIIKIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQES 321
           T + +NV+ + +     SN +  + GNYE    +T   +K++  ++N         +  +
Sbjct: 761 TTNSLNVLKEADSIYILSNGKIVEKGNYEHLFVSTNSELKQQLSEFNDEKDTQPLPEHTT 820

Query: 322 SLPCDSGQPWPFVKIE 369
           S P       P + +E
Sbjct: 821 SYPSTQISLAPSIHVE 836


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +1

Query: 97  FTFIYEVTCNI*NMSTDHIMNVIIKIEPKEETSNEEDNDLGNYEQKIFATEKRIKEER 270
           F  IY+ T ++      + +  + + EP ++ + ++     N  +K+F T KR+ + +
Sbjct: 72  FALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRK 129


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 175 EPKEETSNEEDNDLGNYEQKIFATEKRIKEE 267
           E +EET +EED+++ +  +    +E   +EE
Sbjct: 89  EEEEETESEEDSEVSDESESESESESESEEE 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,946
Number of Sequences: 5004
Number of extensions: 35241
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)