Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_P04
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41...    32   0.20 
06_03_1481 - 30436904-30437059,30437150-30437221,30437559-304379...    30   0.81 
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647...    28   4.3  
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034     28   4.3  
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215...    27   5.7  
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93...    27   5.7  
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004           27   7.5  
01_05_0601 + 23573488-23574250,23574300-23574406,23575325-235754...    27   7.5  

>06_01_0043 -
           412675-412798,412891-412997,413104-413197,413733-413820,
           413902-413943,414117-414223,414812-414942
          Length = 230

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = +1

Query: 172 IEPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQESSLPCDSGQPW 351
           +EP+ +  ++ED+D  +  + + A  +RIK+ER + N+      + ++      +  +  
Sbjct: 115 VEPRSDDESDEDDDDDDDTEALMAELERIKKERAEENLRKERQQAEEEAKMKEAELMRGN 174

Query: 352 PFVKIEEQG 378
           P + I   G
Sbjct: 175 PLININNAG 183


>06_03_1481 -
           30436904-30437059,30437150-30437221,30437559-30437902,
           30438014-30438137,30438244-30438386,30438792-30438927,
           30439469-30439818,30440458-30440542
          Length = 469

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 453 GRISIDSVYGLSSIFNALSVSNCSNSL 373
           GR  ID+VY    IF  + ++NCS SL
Sbjct: 440 GRTLIDTVYKNIDIFGVVKIANCSKSL 466


>11_03_0148 +
           10762150-10762264,10762347-10762776,10764653-10764735,
           10764980-10765068,10765178-10765251,10765333-10765383,
           10765687-10765763,10766237-10767012
          Length = 564

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 142 TDHIMNVIIKIEPKEETSNEEDNDLGNY 225
           TD++M++ +  EP    S+   N +GNY
Sbjct: 365 TDNVMDINVNTEPNNVVSSHFTNGVGNY 392


>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
          Length = 760

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 175 EPKEETSNEEDNDLGNYEQKIFATEKRIKEE-RIDYNISWSPPDSADQE 318
           E ++E  + E+N++ NYE++    E+R  EE  I+YN      +S  +E
Sbjct: 529 ETEDEERDSEENEI-NYEEEADQDEEREAEENEINYNEEAEDEESETEE 576


>09_01_0144 -
           2158924-2158962,2159180-2159315,2159393-2159499,
           2159594-2160055,2162755-2162836,2164222-2164346,
           2164555-2164623,2164935-2165056,2165823-2165856
          Length = 391

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 289 WSPPDSADQESSLPCDSGQPW 351
           W  P  ++Q+S LPC+ G PW
Sbjct: 225 WMKPRPSEQKS-LPCEGGFPW 244


>04_01_0085 -
           932461-932464,932656-933002,933387-935041,935084-935882,
           936693-936707
          Length = 939

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 256 IKEERIDYNISWSPPDSADQESSLPCDSGQPW 351
           ++++ +DY   W     AD  SS  C S  PW
Sbjct: 256 LRQQHVDYTQHWDT--HADTTSSTCCHSSSPW 285


>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
          Length = 266

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 271 IDYNISWSPPDSADQESSLP 330
           ID N+S SPP S+ Q SS P
Sbjct: 169 IDLNLSISPPSSSSQPSSPP 188


>01_05_0601 +
           23573488-23574250,23574300-23574406,23575325-23575491,
           23575565-23575713,23575814-23576256
          Length = 542

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 256 FSSQWQIFSVRNSLNRCPLHLTFP 185
           F    +++SVR+S +RCP  + FP
Sbjct: 162 FGELVKVWSVRHSRDRCPFQVLFP 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,942
Number of Sequences: 37544
Number of extensions: 190865
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)