Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_P04
(467 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 31 1.5
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 31 1.5
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 31 1.5
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 31 1.5
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 31 1.5
BC105598-1|AAI05599.1| 259|Homo sapiens DDX46 protein protein. 30 3.5
BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 30 3.5
AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein. 30 3.5
AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein. 30 3.5
AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear r... 30 4.6
BC013867-1|AAH13867.2| 510|Homo sapiens PALLD protein protein. 29 8.0
AY211921-1|AAO65174.1| 294|Homo sapiens sarcoma antigen NY-SAR-... 29 8.0
AF464873-1|AAL69964.1| 1106|Homo sapiens myoneurin protein. 29 8.0
AB023209-1|BAA76836.1| 772|Homo sapiens KIAA0992 protein protein. 29 8.0
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 31.5 bits (68), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 232 KIFATEKRIKEERIDYNISWSPPD 303
+I T R+K++ +DYN+ W+P D
Sbjct: 68 QIVTTNVRLKQQWVDYNLKWNPDD 91
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 31.5 bits (68), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 232 KIFATEKRIKEERIDYNISWSPPD 303
+I T R+K++ +DYN+ W+P D
Sbjct: 68 QIVTTNVRLKQQWVDYNLKWNPDD 91
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 31.5 bits (68), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 232 KIFATEKRIKEERIDYNISWSPPD 303
+I T R+K++ +DYN+ W+P D
Sbjct: 68 QIVTTNVRLKQQWVDYNLKWNPDD 91
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 31.5 bits (68), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 232 KIFATEKRIKEERIDYNISWSPPD 303
+I T R+K++ +DYN+ W+P D
Sbjct: 68 QIVTTNVRLKQQWVDYNLKWNPDD 91
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 31.5 bits (68), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 232 KIFATEKRIKEERIDYNISWSPPD 303
+I T R+K++ +DYN+ W+P D
Sbjct: 68 QIVTTNVRLKQQWVDYNLKWNPDD 91
>BC105598-1|AAI05599.1| 259|Homo sapiens DDX46 protein protein.
Length = 259
Score = 30.3 bits (65), Expect = 3.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 169 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 276
K + K++ +E++ D GN++Q E R ++ER++
Sbjct: 133 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 168
>BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46 protein.
Length = 1031
Score = 30.3 bits (65), Expect = 3.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 169 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 276
K + K++ +E++ D GN++Q E R ++ER++
Sbjct: 133 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 168
>AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein.
Length = 1031
Score = 30.3 bits (65), Expect = 3.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 169 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 276
K + K++ +E++ D GN++Q E R ++ER++
Sbjct: 133 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 168
>AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein.
Length = 1058
Score = 30.3 bits (65), Expect = 3.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 169 KIEPKEETSNEEDNDLGNYEQKIFATEKRIKEERID 276
K + K++ +E++ D GN++Q E R ++ER++
Sbjct: 159 KKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVE 194
>AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 428
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 226 EQKIFATEKRIKEERIDYNISWSPPDSADQESSL 327
E +I K IK R DYN S S PDS+ E L
Sbjct: 44 ELRILLQSKNIKALRTDYNASVSVPDSSGPERIL 77
>BC013867-1|AAH13867.2| 510|Homo sapiens PALLD protein protein.
Length = 510
Score = 29.1 bits (62), Expect = 8.0
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 175 EPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQE---SSLPCDSGQ 345
EP+EET+N+ E K+ + E+R+ E I+Y + SP D + E +P ++G
Sbjct: 76 EPEEETANQ--------EYKVSSCEQRLISE-IEYRLERSPVDESGDEVQYGDVPVENGM 126
Query: 346 PWPFVKIE 369
PF +++
Sbjct: 127 A-PFFEMK 133
>AY211921-1|AAO65174.1| 294|Homo sapiens sarcoma antigen NY-SAR-77
protein.
Length = 294
Score = 29.1 bits (62), Expect = 8.0
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 175 EPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQE---SSLPCDSGQ 345
EP+EET+N+ E K+ + E+R+ E I+Y + SP D + E +P ++G
Sbjct: 78 EPEEETANQ--------EYKVSSCEQRLISE-IEYRLERSPVDESGDEVQYGDVPVENGM 128
Query: 346 PWPFVKIE 369
PF +++
Sbjct: 129 A-PFFEMK 135
>AF464873-1|AAL69964.1| 1106|Homo sapiens myoneurin protein.
Length = 1106
Score = 29.1 bits (62), Expect = 8.0
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 175 EPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQE---SSLPCDSGQ 345
EP+EET+N+ E K+ + E+R+ E I+Y + SP D + E +P ++G
Sbjct: 725 EPEEETANQ--------EYKVSSCEQRLISE-IEYRLERSPVDESGDEVQYGDVPVENGM 775
Query: 346 PWPFVKIE 369
PF +++
Sbjct: 776 A-PFFEMK 782
>AB023209-1|BAA76836.1| 772|Homo sapiens KIAA0992 protein protein.
Length = 772
Score = 29.1 bits (62), Expect = 8.0
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = +1
Query: 175 EPKEETSNEEDNDLGNYEQKIFATEKRIKEERIDYNISWSPPDSADQE---SSLPCDSGQ 345
EP+EET+N+ E K+ + E+R+ E I+Y + SP D + E +P ++G
Sbjct: 338 EPEEETANQ--------EYKVSSCEQRLISE-IEYRLERSPVDESGDEVQYGDVPVENGM 388
Query: 346 PWPFVKIE 369
PF +++
Sbjct: 389 A-PFFEMK 395
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,921,231
Number of Sequences: 237096
Number of extensions: 1171800
Number of successful extensions: 2963
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2963
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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