Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O24
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 196 7e-51
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 192 2e-49
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 1.3
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 1.8
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.3
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 2.3
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 3.1
06_01_0913 - 7042230-7043332,7043420-7043621 28 5.4
09_03_0103 - 12383585-12384700 27 7.1
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 27 7.1
01_01_1134 + 8994315-8995892 27 7.1
08_01_0342 - 3016705-3016884,3016963-3017031,3017322-3017408,301... 27 9.4
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 9.4
05_05_0137 - 22641577-22642119 27 9.4
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 9.4
02_04_0094 + 19664434-19665078 27 9.4
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 196 bits (479), Expect = 7e-51
Identities = 102/173 (58%), Positives = 122/173 (70%), Gaps = 9/173 (5%)
Frame = +1
Query: 40 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 216
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 217 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 396
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 397 PLGRKK--------GAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 531
+GRKK A+ E E A K+S +K RQ+ ++ +EE
Sbjct: 121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEE 173
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 192 bits (467), Expect = 2e-49
Identities = 95/139 (68%), Positives = 110/139 (79%), Gaps = 3/139 (2%)
Frame = +1
Query: 40 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 216
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 217 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLL 396
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 397 PLGRKKGAKLT--EAEEAI 447
+GRKK A +AE A+
Sbjct: 121 DIGRKKKAPAAKKDAEHAL 139
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 112 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 246
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 263 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 144
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 67 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 201
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 67 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 216
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 67 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 201
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 166 IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 345
+H + + GG T R +R C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 346 V 348
V
Sbjct: 436 V 436
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 142 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 50
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 227 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 117
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>09_03_0103 - 12383585-12384700
Length = 371
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -2
Query: 450 YDGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTHQFIVRGIINNIN 274
+D F E+ T W+Q+ +F P G+H + ++ Y ++I IN +N
Sbjct: 173 FDSFNVCCEIFTIGDKSWRQIGSFHGAPTDRGVHVNGAVYY--LTKFRYIASSRINCLN 229
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 72 PLMPMITTDTHLGWVRKEKI 13
P++PM+ T THL W RK +
Sbjct: 162 PIVPMVVTGTHLAW-RKNSL 180
>01_01_1134 + 8994315-8995892
Length = 525
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 226 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 369
G F+ C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>08_01_0342 -
3016705-3016884,3016963-3017031,3017322-3017408,
3017603-3017650,3017783-3017873,3018243-3018322,
3018429-3018533,3019457-3019551,3019710-3019788,
3020214-3020402
Length = 340
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -2
Query: 489 QVLLRC----LLTAFFVYDGFLSLSELGTFLPSEWQQVVAFIPL 370
Q+LL C LL F Y GFL L T + EWQ VV + L
Sbjct: 246 QLLLLCPVLFLLQGFEGYVGFLLLRTAHTGIVPEWQVVVCGVLL 289
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 242 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 153
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.1 bits (57), Expect = 9.4
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -3
Query: 242 PHAKFPVSRR-------RARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP 84
PHA +S R R R +PP LT G L + P S LFLR GAR
Sbjct: 27 PHAALAISHRGKSCVRARGRRGRIPPAPLTA----GHESCLVSAVPLSGTLFLRSGAREL 82
Query: 83 PVA 75
P+A
Sbjct: 83 PLA 85
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -3
Query: 182 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 66
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>02_04_0094 + 19664434-19665078
Length = 214
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 342 CRGGCHTFQAVV*KPLPAATRKEER 416
C GG T +AVV LPAA RK R
Sbjct: 107 CAGGGGTAKAVVIAGLPAAARKASR 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,888
Number of Sequences: 37544
Number of extensions: 409868
Number of successful extensions: 1105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -