Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_O24
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   305   2e-85
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.9  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  305 bits (748), Expect = 2e-85
 Identities = 139/164 (84%), Positives = 151/164 (92%)
 Frame = +1

Query: 40  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 219
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 220 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLP 399
           DTGNF+WGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY+LP
Sbjct: 61  DTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLP 120

Query: 400 LGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEE 531
           LGRK+GAKLTEAEE ++NKKRS+K   KY +RQR +KVE  LEE
Sbjct: 121 LGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEE 164


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 529 PPDHPLPWTGAACSGTS 479
           PP+ P+P   +AC G++
Sbjct: 180 PPEPPVPTVTSACVGSA 196


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 291 IINNINNTSLAG 256
           +INN NNTS+ G
Sbjct: 488 VINNRNNTSMKG 499


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 269 VLLMLFIMPLTMNWCVPKPW*RMLLSWWMPHL 364
           VL + F  P T N     PW R +   WMP L
Sbjct: 333 VLNVHFRSPSTHNM---SPWVRQVFLNWMPRL 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 271 YESCGLNIQIPMRSFQYQD 215
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +2

Query: 269 VLLMLFIMPLTMNWCVPKPW 328
           +L+   +MPL + W +   W
Sbjct: 85  LLVTFLMMPLEIGWAITVSW 104


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 409 KKGAKLTEAEEAIINKKRSQKTAKKY 486
           KKG+ +T+    +I  + ++K  K+Y
Sbjct: 517 KKGSFVTQYVGEVITNEEAEKRGKEY 542


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 259 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 372
           RK  + +VVY    N + +    V + I ++ A+P ++
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,870
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)