Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O23
(346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 88 3e-19
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 88 3e-19
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 88 3e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 31 0.066
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 3.3
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 3.3
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 4.4
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 25 4.4
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 24 5.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 88.2 bits (209), Expect = 3e-19
Identities = 49/98 (50%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRWKCTTRLYKKL---YP 210
P + K IGTVPVGRV+TG++KPG F+P ++V K ++ L P
Sbjct: 247 PLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA--GVTTEV--KSVEMHHESLDAGLP 302
Query: 211 GDNVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
GDNVGFNVKN+SV+++RRG V GDSKN+P G A FTA
Sbjct: 303 GDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTA 340
Score = 40.3 bits (90), Expect = 8e-05
Identities = 27/67 (40%), Positives = 29/67 (43%)
Frame = +3
Query: 9 ARPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHE 188
ARPTD LRLPLQDVYKIG G K VEMHHE
Sbjct: 237 ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKS-VEMHHE 295
Query: 189 ALQEAVP 209
+L +P
Sbjct: 296 SLDAGLP 302
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 88.2 bits (209), Expect = 3e-19
Identities = 49/98 (50%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRWKCTTRLYKKL---YP 210
P + K IGTVPVGRV+TG++KPG F+P ++V K ++ L P
Sbjct: 247 PLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA--GVTTEV--KSVEMHHESLDAGLP 302
Query: 211 GDNVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
GDNVGFNVKN+SV+++RRG V GDSKN+P G A FTA
Sbjct: 303 GDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTA 340
Score = 40.3 bits (90), Expect = 8e-05
Identities = 27/67 (40%), Positives = 29/67 (43%)
Frame = +3
Query: 9 ARPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHE 188
ARPTD LRLPLQDVYKIG G K VEMHHE
Sbjct: 237 ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKS-VEMHHE 295
Query: 189 ALQEAVP 209
+L +P
Sbjct: 296 SLDAGLP 302
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 88.2 bits (209), Expect = 3e-19
Identities = 49/98 (50%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRWKCTTRLYKKL---YP 210
P + K IGTVPVGRV+TG++KPG F+P ++V K ++ L P
Sbjct: 247 PLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA--GVTTEV--KSVEMHHESLDAGLP 302
Query: 211 GDNVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
GDNVGFNVKN+SV+++RRG V GDSKN+P G A FTA
Sbjct: 303 GDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTA 340
Score = 40.3 bits (90), Expect = 8e-05
Identities = 27/67 (40%), Positives = 29/67 (43%)
Frame = +3
Query: 9 ARPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHE 188
ARPTD LRLPLQDVYKIG G K VEMHHE
Sbjct: 237 ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKS-VEMHHE 295
Query: 189 ALQEAVP 209
+L +P
Sbjct: 296 SLDAGLP 302
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.7 bits (66), Expect = 0.066
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 73 GTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGDNVGFNVKNLSV 249
GTV GRV+ G LK G H + V + + GDN G ++++
Sbjct: 267 GTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKR 326
Query: 250 QELRRGYV 273
++L+RG +
Sbjct: 327 EQLKRGMI 334
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 3.3
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -2
Query: 231 VETNIVTRVQLLVEPRGAFPPDLTSVVMLAGAKTTTSTRL*DTSVNSTH 85
V+ VTR L V R F PD + + G TT D+SVN H
Sbjct: 2910 VDAGGVTREWLQVLARQMFNPDYALFLPVTGDATTFHPNR-DSSVNPDH 2957
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 3.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 225 FQRQKLICPGIAPWLRCRRFEEQ 293
++R ++ P + WLR RFEE+
Sbjct: 194 YERFVVVHPEVTNWLRWARFEEE 216
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 24.6 bits (51), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 175 KCTTRLYKKLYPGDNVGFNVKNLSVQELRRGYVAG 279
KC ++ +YPG+ GF LS + LR Y G
Sbjct: 48 KCRKQVNPNIYPGNIAGFKT-ILSKEGLRGLYTGG 81
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.6 bits (51), Expect = 4.4
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Frame = +2
Query: 161 VKSGGNAPRGSTRSCTLVTMLVSTSKT--YLSRNCAVVTLQEIRRTTHP 301
++ G P S S +L T T YLS NC + + R T P
Sbjct: 306 LEKGYRQPSSSRNSWIFTLLLTFTQLTIFYLSLNCLIENPYRMLRNTFP 354
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 24.2 bits (50), Expect = 5.8
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -2
Query: 156 VVMLAGAKTTTSTRL*DTSVNSTHGYCSNTRRFCIRLAGE 37
V+ G + RL + C+N RRF ++ GE
Sbjct: 31 VIFRHGERAPVKERLGSAGIPKDWKLCNNARRFFAQIKGE 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,815
Number of Sequences: 5004
Number of extensions: 27863
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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