Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O23
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 87 5e-18
03_01_0547 + 4093196-4093657,4094267-4095148 87 5e-18
03_01_0544 + 4082528-4082989,4083585-4084466 87 5e-18
03_01_0543 + 4076981-4077442,4078145-4079026 87 5e-18
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 32 0.11
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 29 0.98
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 29 1.3
06_01_0337 - 2432823-2432933,2433280-2433373,2434079-2434170,243... 28 1.7
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 27 5.2
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642... 27 5.2
07_01_0316 + 2226010-2226256,2226956-2227047,2227143-2227180,222... 26 6.9
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 26 6.9
05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561 26 9.1
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 26 9.1
03_05_0615 + 26137785-26138593,26139307-26141368 26 9.1
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 86.6 bits (205), Expect = 5e-18
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGD 216
P + K IGTVPVGRV+TG+LKPG F P ++V+ + ++ PGD
Sbjct: 237 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS--GLTTEVKSVEMHHEALQEALPGD 294
Query: 217 NVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
NVGFNVKN++V++L+RGYVA +SK++P++ AA FT+
Sbjct: 295 NVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTS 330
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/66 (43%), Positives = 31/66 (46%)
Frame = +3
Query: 12 RPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHEA 191
RP+D LRLPLQDVYKIG G K VEMHHEA
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS-VEMHHEA 286
Query: 192 LQEAVP 209
LQEA+P
Sbjct: 287 LQEALP 292
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 86.6 bits (205), Expect = 5e-18
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGD 216
P + K IGTVPVGRV+TG+LKPG F P ++V+ + ++ PGD
Sbjct: 237 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS--GLTTEVKSVEMHHEALQEALPGD 294
Query: 217 NVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
NVGFNVKN++V++L+RGYVA +SK++P++ AA FT+
Sbjct: 295 NVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTS 330
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/66 (43%), Positives = 31/66 (46%)
Frame = +3
Query: 12 RPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHEA 191
RP+D LRLPLQDVYKIG G K VEMHHEA
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS-VEMHHEA 286
Query: 192 LQEAVP 209
LQEA+P
Sbjct: 287 LQEALP 292
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 86.6 bits (205), Expect = 5e-18
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGD 216
P + K IGTVPVGRV+TG+LKPG F P ++V+ + ++ PGD
Sbjct: 237 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS--GLTTEVKSVEMHHEALQEALPGD 294
Query: 217 NVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
NVGFNVKN++V++L+RGYVA +SK++P++ AA FT+
Sbjct: 295 NVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTS 330
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/66 (43%), Positives = 31/66 (46%)
Frame = +3
Query: 12 RPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHEA 191
RP+D LRLPLQDVYKIG G K VEMHHEA
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS-VEMHHEA 286
Query: 192 LQEAVP 209
LQEA+P
Sbjct: 287 LQEALP 292
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 86.6 bits (205), Expect = 5e-18
Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGD 216
P + K IGTVPVGRV+TG+LKPG F P ++V+ + ++ PGD
Sbjct: 237 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS--GLTTEVKSVEMHHEALQEALPGD 294
Query: 217 NVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
NVGFNVKN++V++L+RGYVA +SK++P++ AA FT+
Sbjct: 295 NVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTS 330
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/66 (43%), Positives = 31/66 (46%)
Frame = +3
Query: 12 RPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHEA 191
RP+D LRLPLQDVYKIG G K VEMHHEA
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS-VEMHHEA 286
Query: 192 LQEAVP 209
LQEA+P
Sbjct: 287 LQEALP 292
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 32.3 bits (70), Expect = 0.11
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +1
Query: 70 IGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRWKCTTRLYKKLYPGDNVGFNVKNLSV 249
+GTV +G++++G + G + P + + C + PG+NV + +
Sbjct: 194 MGTVVMGKIESGTISEGDNMLVMPNKANV-KVISVHCDEDRVRSAAPGENVRVKLSGIEE 252
Query: 250 QELRRGYVAGDSKNNPSRGAADFTA 324
++ G+V K NP ++F A
Sbjct: 253 DDITAGFVLSSIK-NPVSAISEFRA 276
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 29.1 bits (62), Expect = 0.98
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 113 FRIPVSTLPTGTVPIHADFVYVLQGKTESIV 21
FR+ S + T P+H F YVL+ + E +V
Sbjct: 163 FRVTYSRMMLYTTPVHGTFYYVLRYEAEYVV 193
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -2
Query: 210 RVQLLVEPRGAFPPD-LTSVVMLAGAKTTT 124
R+QLL++ GAF P LT++V ++GA TT
Sbjct: 875 RLQLLIDVTGAFRPGILTALVGVSGAGKTT 904
>06_01_0337 -
2432823-2432933,2433280-2433373,2434079-2434170,
2434565-2434679,2435253-2435335,2435544-2435654,
2435884-2435971,2436004-2436326
Length = 338
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 199 KLYPGD-NVGFNVKNLSVQELRRGYVAGDSKNNPSR 303
+L GD VGFNV+NL LR+ V D P+R
Sbjct: 250 RLVSGDVGVGFNVRNLRRNFLRKWKVFYDDPKRPNR 285
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 137 APANITTEVKSGGNAPRGSTRS 202
+P +TTEV GG P GST S
Sbjct: 237 SPPLLTTEVNVGGGEPIGSTAS 258
>02_02_0654 -
12662931-12663200,12663296-12663550,12664097-12664268,
12664354-12664581,12664727-12664860,12665018-12665101,
12665332-12665538,12665641-12665973,12666175-12666281,
12666439-12666593,12666778-12666810,12666924-12666972,
12667152-12667312,12667413-12668313,12668391-12668481,
12668558-12668749
Length = 1123
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -2
Query: 213 TRVQLLVEPRGAFPPD-LTSVVMLAGAKTTT 124
+R+QLL + GAF P LT++V ++GA TT
Sbjct: 573 SRLQLLSDISGAFRPGLLTALVGVSGAGKTT 603
>07_01_0316 +
2226010-2226256,2226956-2227047,2227143-2227180,
2227289-2227450,2227540-2227562,2227673-2227744,
2227858-2228025,2228318-2228400,2228533-2228595,
2228735-2228917
Length = 376
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 284 ESPAT*PRRNSWTDKFLT-LKPTLS 213
E P T PR N++T +FLT L+P ++
Sbjct: 277 EKPPTGPRANTYTPEFLTKLQPLMN 301
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 198 LVEPRGAFPPDLTSVVMLAGAK-TTTSTRL*DTSVNSTHGYCSNT 67
+VEP GAFP V+ LA + +TS R +S +S+ G+ N+
Sbjct: 410 MVEPSGAFP---EPVIKLAVQRYVSTSQRQKQSSSSSSSGFSGNS 451
>05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561
Length = 512
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 260 RNSWTDKFLTLKPTLSPGYSFL 195
RN W ++P LSPG S++
Sbjct: 223 RNQWESMVCLVRPALSPGKSYV 244
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 25.8 bits (54), Expect = 9.1
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 73 GTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRWKCT-TRLYKKLY----PGDNVGFNVK 237
GTV GRV+ G +K G ++ T ++KK+ GDNVG ++
Sbjct: 282 GTVVTGRVEQGTIKTGEDVEILGLTPS--GPLKTTVTGVEMFKKILDHGEAGDNVGLLLR 339
Query: 238 NLSVQELRRGYV 273
L +++RG V
Sbjct: 340 GLKRGDVQRGQV 351
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 216 QCWFQRQKLICPGIAPWLRCRRFEEQPIQGSC 311
QCW PG PW++ R P SC
Sbjct: 828 QCWCPLGLEFAPGAMPWVQTFRLWFMPCWKSC 859
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,260
Number of Sequences: 37544
Number of extensions: 205440
Number of successful extensions: 521
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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