Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_O23
(346 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 105 1e-25
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 104 3e-25
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 86 1e-19
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 79 1e-17
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 5.4
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 20 9.5
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 105 bits (252), Expect = 1e-25
Identities = 55/96 (57%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGD 216
P + K IGTVPVGRV+TG+LKPG F+P ++V+ + ++ PGD
Sbjct: 249 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPA--GLTTEVKSVEMHHEALQEAVPGD 306
Query: 217 NVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
NVGFNVKN+SV+ELRRGYVAGDSKNNP +GAADFTA
Sbjct: 307 NVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTA 342
Score = 49.2 bits (112), Expect = 1e-08
Identities = 32/66 (48%), Positives = 32/66 (48%)
Frame = +3
Query: 12 RPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHEA 191
RPTD ALRLPLQDVYKIG G K VEMHHEA
Sbjct: 240 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKS-VEMHHEA 298
Query: 192 LQEAVP 209
LQEAVP
Sbjct: 299 LQEAVP 304
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 104 bits (249), Expect = 3e-25
Identities = 56/96 (58%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGD 216
P + K IGTVPVGRV+TGILKPG F+P ++V+ + + PGD
Sbjct: 249 PLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPA--ALTTEVKSVEMHHEALTEALPGD 306
Query: 217 NVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
NVGFNVKN+SV+ELRRGYVAGDSKN P RGAADFTA
Sbjct: 307 NVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTA 342
Score = 46.4 bits (105), Expect = 1e-07
Identities = 30/67 (44%), Positives = 32/67 (47%)
Frame = +3
Query: 9 ARPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHE 188
+RPTD ALRLPLQDVYKIG G K VEMHHE
Sbjct: 239 SRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKS-VEMHHE 297
Query: 189 ALQEAVP 209
AL EA+P
Sbjct: 298 ALTEALP 304
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 85.8 bits (203), Expect = 1e-19
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +1
Query: 40 PCKTYTKSACIGTVPVGRVDTGILKPGTSCRFSPC*HHY*SQVRW-KCTTRLYKKLYPGD 216
P + K IGTVPVGRV+TG+LKPG F+P ++V+ + ++ PGD
Sbjct: 192 PLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPA--GLTTEVKSVEMHHEALQEAVPGD 249
Query: 217 NVGFNVKNLSVQELRRGYVAGDSKN 291
NVGFNVKN+SV+ELRRGYVAGDSKN
Sbjct: 250 NVGFNVKNVSVKELRRGYVAGDSKN 274
Score = 49.2 bits (112), Expect = 1e-08
Identities = 32/66 (48%), Positives = 32/66 (48%)
Frame = +3
Query: 12 RPTDNALRLPLQDVYKIGVYWNSTRG*S*HWYPKAWYXXXXXXXXXXXXXXXPVEMHHEA 191
RPTD ALRLPLQDVYKIG G K VEMHHEA
Sbjct: 183 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKS-VEMHHEA 241
Query: 192 LQEAVP 209
LQEAVP
Sbjct: 242 LQEAVP 247
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 79.0 bits (186), Expect = 1e-17
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +1
Query: 208 PGDNVGFNVKNLSVQELRRGYVAGDSKNNPSRGAADFTA 324
PGDNVGFNVKN+SV+ELRRGYVAGDSKN P RGAADFTA
Sbjct: 15 PGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTA 53
Score = 27.9 bits (59), Expect = 0.036
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 171 VEMHHEALQEAVP 209
VEMHHEAL EA+P
Sbjct: 3 VEMHHEALTEALP 15
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 20.6 bits (41), Expect = 5.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 251 WTDKFLTLKPTLSPGYSFL 195
WTD L+ KP+ G +++
Sbjct: 99 WTDSHLSWKPSDFDGINYI 117
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 19.8 bits (39), Expect = 9.5
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 67 TPILYTSCR 41
TPI+Y SC+
Sbjct: 134 TPIVYASCK 142
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,322
Number of Sequences: 438
Number of extensions: 1931
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 7812315
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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